Publications

Eugenio Llanos, Wilmer Leal, Andrés Bernal, Jürgen Jost, und Peter F. Stadler. Are the chemical families still there? Formal structure of similarity of elements and its thermochemical domain. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, (480)2298The Royal Society, September 2024. [PUMA: Formal chemical families similarity structure zno] URL

Eugenio Llanos, Wilmer Leal, Andrés Bernal, Jürgen Jost, und Peter F. Stadler. Are the chemical families still there? Formal structure of similarity of elements and its thermochemical domain. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, (480)2298The Royal Society, September 2024. [PUMA: chemical similarity Formal from:scadsfct families structure] URL

Dustyn Eggers, Christian Höner zu Siederdissen, und Peter F. Stadler. Accuracy of RNA Structure Prediction Depends on the Pseudoknot Grammar. Advances in Bioinformatics and Computational Biology, 20–31, Springer Nature Switzerland, 2022. [PUMA: DependsPseudoknot Grammar Prediction RNA Structure] URL

Dustyn Eggers, Christian Höner zu Siederdissen, und Peter F. Stadler. Accuracy of RNA Structure Prediction Depends on the Pseudoknot Grammar. Advances in Bioinformatics and Computational Biology, 20–31, Springer Nature Switzerland, 2022. [PUMA: DependsPseudoknot RNA Prediction Grammar from:scadsfct Structure] URL

Fabian Liessmann, Lukas von Bredow, Jens Meiler, und rahm Liebscher, Ines. Targeting adhesion G protein-coupled receptors. Current status and future perspectives. Structure, Elsevier, November 2024. [PUMA: topic_lifescience ADGRG1; ADGRG2; ADGRG3; ADGRG5; ADGRG6; ADGRG7; GPCRs; GPR114; GPR126; GPR128; GPR56; GPR64; GPR97; adhesion area_bigdata discovery; drug ep ligands; molecules; small structure]

Minh H Tran, Clara T Schoeder, Kevin L Schey, und Jens Meiler. Computational structure prediction for antibody-antigen complexes from hydrogen-deuterium exchange mass spectrometry: Challenges and outlook. Front. Immunol., (13):859964, Frontiers Media SA, Mai 2022. [PUMA: topic_lifescience (HDX-MS); antibody-antigen biology; docking; epitope-paratope exchange hydrogen-deuterium identification; integrative interaction; mass modeling protein-protein spectrometry structural structure]

Davide Sala, Diego Del Alamo, Hassane S Mchaourab, und Jens Meiler. Modeling of protein conformational changes with Rosetta guided by limited experimental data. Structure, (30)8:1157--1168.e3, Elsevier BV, August 2022. [PUMA: topic_lifescience EPR Rosetta; biology; changes; conformational dynamics; integrative modeling; molecular protein refinement spectroscopy; structural structure]

Pranav Kodali, Clara T Schoeder, Samuel Schmitz, James E Crowe, Jr, und Jens Meiler. RosettaCM for antibodies with very long HCDR3s and low template availability. Proteins, (89)11:1458--1472, Wiley, November 2021. [PUMA: Rosetta; antibody; benchmark; homology loop modeling; prediction; structure topic_lifescience]

Ronny Lorenz, und Peter F Stadler. RNA secondary structures with limited base pair span: Exact backtracking and an application. Genes (Basel), (12)1:14, MDPI AG, Dezember 2020. [PUMA: RNA algorithm elements; hyper-stable prediction; scanning secondary structure]

Kaitlyn V Ledwitch, Georg Künze, Jacob R McKinney, Elleansar Okwei, Katherine Larochelle, Lisa Pankewitz, Soumya Ganguly, Heather L Darling, Irene Coin, und Jens Meiler. Sparse pseudocontact shift NMR data obtained from a non-canonical amino acid-linked lanthanide tag improves integral membrane protein structure prediction. J. Biomol. NMR, (77)3:69--82, Juni 2023. [PUMA: topic_lifescience (IMPs); (PCSs); (ncAAs); Click Integral Non-canonical Pseudocontact Rosetta; Structure acids amino chemistry; membrane prediction proteins shifts]