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Accuracy of RNA Structure Prediction Depends on the Pseudoknot Grammar. Advances in Bioinformatics and Computational Biology, 20–31, Springer Nature Switzerland, 2022. [PUMA: DependsPseudoknot Grammar Prediction RNA Structure nopdf] URL
A Relation between Natural Selection and Computational Complexity. Oktober 2024. [PUMA: Biological Complexity Computation Computational Developmental Folding Genotype-Phenotype Map Program RNA zno] URL
cyPhyRNA-seq: a genome-scale RNA-seq method to detect active self-cleaving ribozymes by capturing RNAs with 2',3' cyclic phosphates and 5' hydroxyl ends. RNA Biol., (18)sup2:818--831, Informa UK Limited, November 2021. [PUMA: (RppH) 5ʹ-3ʹ KQ RNA RtcB T4 Xrn1 exonuclease ligase next-generation pyrophosphohydrolase sequencing truncated zno]
RNA secondary structures with limited base pair span: Exact backtracking and an application. Genes (Basel), (12)1:14, MDPI AG, Dezember 2020. [PUMA: RNA algorithm elements hyper-stable prediction scanning secondary structure yaff]