Publications

Kristina Vogel, Johanna Moeller, Nina G. Bozhanova, Markus Voehler, Anja Penk, Jens Meiler, and Clara T. Schoeder. Computational Engineering of siderocalin to modulate its binding affinity to the antihypertension drug candesartan. Journal of Structural Biology, (217)1:108180, 2025. [PUMA: myown topic_lifescience] URL

Antonia Stubenvoll, Maria Schmidt, Johanna Moeller, Max Alexander Lingner Chango, Carolyn Schultz, Olga Antoniadou, Henry Loeffler-Wirth, Stephan Bernhart, Florian Peter Große, Beatrice Thier, Annette Paschen, Ulf Anderegg, Jan C. Simon, Mirjana Ziemer, Clara T. Schoeder, Hans Binder, and Manfred Kunz. Single-cell transcriptomics and epigenomics point to CD58-CD2 interaction in controlling primary melanoma growth and immunity. Cancer Communications, (n/a)n/aJohn Wiley & Sons, Ltd, January 2025. [PUMA: Yaff melanoma myown single-cell topic_lifescience transcriptomics] URL

Antonia Stubenvoll, Maria Schmidt, Johanna Moeller, Max Alexander Lingner Chango, Carolyn Schultz, Olga Antoniadou, Henry Loeffler-Wirth, Stephan Bernhart, Florian Peter Große, Beatrice Thier, Annette Paschen, Ulf Anderegg, Jan C. Simon, Mirjana Ziemer, Clara T. Schoeder, Hans Binder, and Manfred Kunz. Single-cell transcriptomics and epigenomics point to CD58-CD2 interaction in controlling primary melanoma growth and immunity. Cancer Communications, (n/a)n/aJohn Wiley & Sons, Ltd, January 2025. [PUMA: melanoma myown single-cell topic_lifescience transcriptomics] URL

Marie-Sophie von Braun, Kristin Starke, Lucas Peter, Daniel Kürsten, Florian Welle, Hans Ralf Schneider, Max Wawrzyniak, Daniel P O Kaiser, Gordian Prasse, Cindy Richter, Elias Kellner, Marco Reisert, Julian Klingbeil, Anika Stockert, Karl-Titus Hoffmann, Gerik Scheuermann, Christina Gillmann, and Dorothee Saur. Prediction of tissue and clinical thrombectomy outcome in acute ischaemic stroke using deep learning. In Masud Husain (Eds.), Brain, awaf013, January 2025. [PUMA: biomarker cdss cnn computer_vision deep_learning myown neuroimaging neurology topic_lifescience] URL

João Paulo C. de Lima, Asif Ali Khan, Hamid Farzaneh, and Jeronimo Castrillon. Efficient Associative Processing with RTM-TCAMs. In none (Eds.), 1st in-Memory Architectures and Computing Applications Workshop (iMACAW), co-located with the 60th Design Automation Conference (DAC'23), 2pp, July 2023. [PUMA: accelerator computing-in-memory myown] URL

Asif Ali Khan, João Paulo C. De Lima, Hamid Farzaneh, and Jeronimo Castrillon. The Landscape of Compute-near-memory and Compute-in-memory: A Research and Commercial Overview. In arxiv (Eds.), January 2024. [PUMA: accelerators compiler computing-in-memory energy-efficiency myown] URL

Michael Niemier, Zephan Enciso, Mohammad Mehdi Sharifi, X. Sharon Hu, Ian O'Connor, Alexander Graening, Ravit Sharma, Puneet Gupta, Jeronimo Castrillon, João Paulo C. de Lima, Asif Ali Khan, Hamid Farzaneh, Nashrah Afroze, Asif Islam Khan, and Julien Ryckaert. Smoothing Disruption Across the Stack: Tales of Memory, Heterogeneity, and Compilers. In IEEE (Eds.), Proceedings of the 2024 Design, Automation and Test in Europe Conference (DATE), 1--10, IEEE, March 2024. [PUMA: accelerator compiler computing-in-memory myown nn] URL

João Paulo C. de Lima, Benjamin F. Morris III, Asif Ali Khan, Jeronimo Castrillon, and Alex K. Jones. Count2Multiply: Reliable In-memory High-Radix Counting. In arxiv (Eds.), 1-14, Arxiv, September 2024. [PUMA: LLM accelerator computing-in-memory myown] URL

Hamid Farzaneh, João Paulo Cardoso De Lima, Ali Nezhadi Khelejani, Asif Ali Khan, Mahta Mayahinia, Mehdi Tahoori, and Jeronimo Castrillon. SHERLOCK: Scheduling Efficient and Reliable Bulk Bitwise Operations in NVMs. In IEEE (Eds.), Proceedings of the 61th ACM/IEEE Design Automation Conference (DAC'24), Association for Computing Machinery, New York, NY, USA, June 2024. [PUMA: compiler computing-in-memory myown] URL

João Paulo C de Lima, Asif Ali Khan, Luigi Carro, and Jeronimo Castrillon. Full-Stack Optimization for CAM-Only DNN Inference. In IEEE (Eds.), Proceedings of the 2024 Design, Automation and Test in Europe Conference (DATE), 1-6, IEEE, March 2024. [PUMA: NN accelerator computing-in-memory myown] URL

Hamid Farzaneh, João Paulo Cardoso de Lima, Mengyuan Li, Asif Ali Khan, Xiaobo Sharon Hu, and Jeronimo Castrillon. C4CAM: A Compiler for CAM-based In-memory Accelerators. In Association for Computing Machinery (Eds.), Proceedings of the 29th ACM International Conference on Architectural Support for Programming Languages and Operating Systems (ASPLOS'24), Volume 3, 164--177, Association for Computing Machinery, New York, NY, USA, May 2024. [PUMA: accelerator compiler computing-in-memory myown] URL

Ayse Glass, Jorg R. Noennig, Burak Bek, Roman Glass, Eylul K. Menges, Iryna Okhrin, Pramod Baddam, Mariela Rossana Sanchez, Gunalan Senthil, and René Jäkel. Innovative Urban Design Simulation: Utilizing Agent-Based Modelling through Reinforcement Learning. Proceedings of the 2023 6th International Conference on Computational Intelligence and Intelligent Systems, 20–25, Association for Computing Machinery, New York, NY, USA, Feb 28, 2024. [PUMA: myown] URL

Siavash Ghiasvand, and Florina M. Ciorba. Anomaly Detection in High Performance Computers: A Vicinity Perspective. 2019 18th International Symposium on Parallel and Distributed Computing (ISPDC), 112--120, Amsterdam, Netherlands, June 2019. [PUMA: Anomaly Bridges, Computer Correlation, Graphics HPC Hardware, Resource analysis, anomaly anonymized approach approach, architecture, components, computerised computers, computing computing, detection detection, exascale failure hardware, high hpc, instrumentation, management, mechanism, myOwn node performance prediction, privacy, processing sensors, statistical system system, units, vicinity, vicinity-based,]

Siavash Ghiasvand, Florina M Ciorba, and Wolfgang E Nagel. Turning Privacy Constraints into Syslog Analysis Advantage. International Conference for High Performance Computing, Networking, Storage and Analysis (SC), Salt Lake City, Utah, USA, November 2016. [PUMA: myOwn] URL

Siavash Ghiasvand, Florina M. Ciorba, Ronny Tschuter, and Wolfgang E. Nagel. Lessons Learned from Spatial and Temporal Correlation of Node Failures in High Performance Computers. Proceedings of the 24th Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (PDP), 377--381, IEEE, Heraklion, Crete, Greece, February 2016. [PUMA: myOwn] URL

Siavash Ghiasvand, and Florina M Ciorba. Event Pattern Identification in Anonymized System Logs. International Supercomputing Conference (ISC), Frankfurt, Germany, June 2017. [PUMA: myOwn]

Siavash Ghiasvand, and Florina M Ciorba. Anonymization of System Logs for Preserving Privacy and Reducing Storage. Proceedings of the 2018 Future of Information and Communications Conference (FICC), (1):440--447, Springer, Singapore, April 2018. [PUMA: myOwn]

Siavash Ghiasvand, and Florina M. Ciorba. Towards Adaptive Resilience in High Performance Computing. In E. Grosspietsch, and K. Kloeckner (Eds.), Proceedings of WiP in 25th EUROMICRO International Conference on Parallel, Distributed and Network-based Processing, (1):5--6, SEA-Publications-Austria, St. Petersburg, Russia, March 2017. [PUMA: myOwn]

Sina Mahmoodi Khorandi, Siavash Ghiasvand, and Mohsen Sharifi. Reducing Load Imbalance of Virtual Clusters via Reconfiguration and Adaptive Job Scheduling. Proceedings of the 17th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID), 992--999, IEEE, Madrid, Spain, May 2017. [PUMA: myOwn] URL

Siavash Ghiasvand, Florina M Ciorba, Ronny Tschuter, and Wolfgang E. Nagel. Analysis of Node Failures in High Performance Computers Based on System Logs. International Conference for High Performance Computing, Networking, Storage and Analysis (SC), Austin, Texas, USA, November 2015. [PUMA: myOwn] URL