Publications

Ni Li, Shorouq Zahra, Mariana Brito, Clare Flynn, Olof Görnerup, Koffi Worou, Murathan Kurfali, Chanjuan Meng, Wim Thiery, Jakob Zscheischler, Gabriele Messori, and Joakim Nivre. Using LLMs to Build a Database of Climate Extreme Impacts. Proceedings of the 1st Workshop on Natural Language Processing Meets Climate Change (ClimateNLP 2024), 93–110, Association for Computational Linguistics, 2024. [PUMA: imported zno] URL

Benjamin Gallusser, and Martin Weigert. Trackastra: Transformer-based cell tracking for live-cell microscopy. European Conference on Computer Vision, 467--484, 2025. [PUMA: ML_Spatial_Understanding imported nopdf]

Benjamin Gallusser, and Martin Weigert. Trackastra: Transformer-based cell tracking for live-cell microscopy. European Conference on Computer Vision, 467--484, 2025. [PUMA: imported]

Coleman Broaddus, Alexander Krull, Martin Weigert, Uwe Schmidt, and Gene Myers. Removing Structured Noise with Self-Supervised Blind-Spot Networks. 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI), 159--163, 2020. [PUMA: imported]

Martin Weigert, Uwe Schmidt, Robert Haase, Ko Sugawara, and Gene Myers. Star-convex Polyhedra for 3D Object Detection and Segmentation in Microscopy. WACV, 2020. [PUMA: imported]

Dora Mahecic, Willi L. Stepp, Chen Zhang, Juliette Griffié, Martin Weigert, and Suliana Manley. Event-driven acquisition for content-enriched microscopy. (19)10:1262--1267, 2022. [PUMA: imported] URL

Nils Wagner, Fynn Beuttenmueller, Nils Norlin, Jakob Gierten, Juan Carlos Boffi, Joachim Wittbrodt, Martin Weigert, Lars Hufnagel, Robert Prevedel, and Anna Kreshuk. Deep learning-enhanced light-field imaging with continuous validation. Nature Methods, (18)5:557--563, Nature Publishing Group, 2021. [PUMA: imported]

Andreas Müller, Deborah Schmidt, C Shan Xu, Song Pang, Joyson Verner D’Costa, Susanne Kretschmar, Carla Münster, Thomas Kurth, Florian Jug, Martin Weigert, Harald F Hess, and Solimena* Michele. 3D FIB-SEM reconstruction of microtubule--organelle interaction in whole primary mouse $\beta$ cells. JCB, The Rockefeller University Press, 2021. [PUMA: imported]

Kaushikaram Subramanian, Martin Weigert, Oliver Borsch, Heike Petzold, Alfonso Garcia-Ulloa, Eugene W Myers, Marius Ader, Irina Solovei, and Moritz Kreysing. Rod nuclear architecture determines contrast transmission of the retina and behavioral sensitivity in mice. eLife, (8):e49542, eLife Sciences Publications Limited, 2019. [PUMA: imported]

Andreas Müller, Deborah Schmidt, Lucas Rieckert, Michele Solimena, and Martin Weigert. Organelle-specific segmentation, spatial analysis, and visualization of volume electron microscopy datasets. arXiv preprint arXiv:2303.03876, 2023. [PUMA: imported]

Nina Vogt. Simulating the imaging process in scattering tissue. Nature methods, (15)6:406--406, Nature Publishing Group, 2018. [PUMA: imported]

Sarah Schmell, Falk Zakrzewski, Walter de Back, Martin Weigert, Uwe Schmidt, Torsten Wenke, Silke Zeugner, Robert Mantey, Christian Sperling, Ingo Roeder, Pia Hoenscheid, Daniela Aust, and Gustavo Baretton. An interpretable automated detection system for FISH-based HER2 oncogene amplification testing in histo-pathological routine images of breast and gastric cancer diagnostics. Medical Imaging with Deep Learning (MIDL), 2020. [PUMA: imported]

Andreas Müller, Deborah Schmidt, Jan Philipp Albrecht, Lucas Rieckert, Maximilian Otto, Leticia Elizabeth Galicia Garcia, Gunar Fabig, Michele Solimena, and Martin Weigert. Modular segmentation, spatial analysis and visualization of volume electron microscopy datasets. Nature Protocols, 1--31, Nature Publishing Group UK London, 2024. [PUMA: imported]

Martin Weigert, Loic Royer, Florian Jug, and Gene Myers. Isotropic Reconstruction of 3D Fluorescence Microscopy Images Using Convolutional Neural Networks. International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2017. [PUMA: imported]

Avinash Patel, Hyun Ou Lee, Louise M. Jawerth, S. K. Maharana, Marcus Jähnel, Marco Y Hein, Stoyno Stefanov Stoynov, Julia Mahamid, Shambaditya Saha, Titus M Franzmann, Andrej Pozniakovski, Ina Poser, Nicola Maghelli, Loic A. Royer, Martin Weigert, Eugene W. Myers, Stephan W Grill, David N. Drechsel, Anthony A. Hyman, and Simon Alberti. A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation. Cell, (162):1066-1077, 2015. [PUMA: imported]

Martin Weigert, and Uwe Schmidt. Nuclei Instance Segmentation and Classification in Histopathology Images with Stardist. 2022 IEEE International Symposium on Biomedical Imaging Challenges (ISBIC), 1-4, 2022. [PUMA: imported]

Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Martin Weigert, Uwe Schmidt, Wenhua Zhang, Jun Zhang, Sen Yang, Jinxi Xiang, Xiyue Wang, and others. CoNIC Challenge: Pushing the Frontiers of Nuclear Detection, Segmentation, Classification and Counting. arXiv preprint arXiv:2303.06274, 2023. [PUMA: imported]

Rita Strack. Deep learning in imaging. Nature methods, (16)1:17--17, Nature Publishing Group, 2019. [PUMA: imported]

Mauricio Rocha-Martins, Elisa Nerli, Jenny Kretzschmar, Martin Weigert, Jaroslav Icha, Eugene W Myers, and Caren Norden. Neuronal migration prevents spatial competition in retinal morphogenesis. Nature, 1--10, Nature Publishing Group UK London, 2023. [PUMA: imported]

Quentin Juppet, Fabio De Martino, Elodie Marcandalli, Martin Weigert, Olivier Burri, Michael Unser, Cathrin Brisken, and Daniel Sage. Deep Learning Enables Individual Xenograft Cell Classification in Histological Images by Analysis of Contextual Features. Journal of Mammary Gland Biology and Neoplasia, Springer, 2021. [PUMA: imported]

Martin Weigert, Kaushikaram Subramanian, Sebastian T. Bundschuh, Eugene W. Myers, and Moritz Kreysing. Biobeam -- Multiplexed wave-optical simulations of light-sheet microscopy. PLoS Computational Biology, 2018. [PUMA: imported]

Wei Ouyang, Fynn Beuttenmueller, Estibaliz Gómez-de Mariscal, Constantin Pape, Tom Burke, Carlos Garcia-López-de Haro, Craig Russell, Luc\'ıa Moya-Sans, Cristina de-la Torre-Gutiérrez, Deborah Schmidt, Dominik Kutra, Maksim Novikov, Martin Weigert, Uwe Schmidt, Peter Bankhead, Guillaume Jacquemet, Daniel Sage, Ricardo Henriques, Arrate Muñoz-Barrutia, Emma Lundberg, Florian Jug, and Anna Kreshuk. BioImage Model Zoo: A Community-Driven Resource for Accessible Deep Learning in BioImage Analysis. bioRxiv, Cold Spring Harbor Laboratory, 2022. [PUMA: imported] URL

Liyuan Sui, Silvanus Alt, Martin Weigert, Natalie Dye, Suzanne Eaton, Florian Jug, Eugene W. Myers, Frank Jülicher, Guillaume Salbreux, and Christian Dahmann. Differential lateral and basal tension drive folding of Drosophila wing discs through two distinct mechanisms. Nature Communications, (9)1:4620, 2018. [PUMA: imported] URL

Falk Zakrzewski, Walter de Back, Martin Weigert, Torsten Wenke, Silke Zeugner, Robert Mantey, Christian Sperling, Katrin Friedrich, Ingo Roeder, Daniela Aust, Gustavo Baretton, and Pia Hönscheid. Automated detection of the HER2 gene amplification status in Fluorescence in situ hybridization images for the diagnostics of cancer tissues. Scientific Reports, (9)1:8231, 2019. [PUMA: imported]

Nicola Dietler, Matthias Minder, Vojislav Gligorovski, Augoustina Maria Economou, Denis Alain Henri Lucien Joly, Ahmad Sadeghi, Chun Hei Michael Chan, Mateusz Koziński, Martin Weigert, Anne-Florence Bitbol, and Sahand Jamal Rahi. A convolutional neural network segments yeast microscopy images with high accuracy. Nature Communications, (11)1:5723, 2020. [PUMA: imported] URL

Loic A Royer, Martin Weigert, Ulrik Günther, Nicola Maghelli, Florian Jug, Ivo F Sbalzarini, and Eugene W Myers. ClearVolume: open-source live 3D visualization for light-sheet microscopy. Nature Methods, (12)6:480, Nature Publishing Group, 2015. [PUMA: imported]

Benjamin Gallusser, Max Stieber, and Martin Weigert. Self-supervised dense representation learning for live-cell microscopy with time arrow prediction. International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2023. [PUMA: imported]

Yuhan Wang, Mark Eddison, Greg Fleishman, Martin Weigert, Shengjin Xu, Tim Wang, Konrad Rokicki, Cristian Goina, Fredrick E Henry, Andrew L Lemire, and others. EASI-FISH for thick tissue defines lateral hypothalamus spatio-molecular organization. Cell, (184)26:6361--6377, Elsevier, 2021. [PUMA: imported]

Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Martin Weigert, Uwe Schmidt, Wenhua Zhang, Jun Zhang, Sen Yang, Jinxi Xiang, Xiyue Wang, and others. CoNIC Challenge: Pushing the frontiers of nuclear detection, segmentation, classification and counting. Medical image analysis, (92):103047, Elsevier, 2024. [PUMA: imported]

Mauro Gwerder, Cansaran Saygili Demir, Hannah L Williams, Alessandro Lugli, Cristina Graham Martinez, Joanna Kowal, Amjad Khan, Philipp Kirchner, Thibaud Koessler, Martin D Berger, and others. Morpho-molecular features of Epithelial Mesenchymal Transition associate with clinical outcome in patients with rectal cancer. bioRxiv, 2024--11, Cold Spring Harbor Laboratory, 2024. [PUMA: imported]

Martin Weigert, Uwe Schmidt, Tobias Boothe, Andreas Müller, Alexandr Dibrov, Akanksha Jain, Benjamin Wilhelm, Deborah Schmidt, Coleman Broaddus, Siân Culley, Mauricio Rocha-Martins, Fabián Segovia-Miranda, Caren Norden, Ricardo Henriques, Marino Zerial, Michele Solimena, Jochen Rink, Pavel Tomancak, Loic Royer, Florian Jug, and Eugene W. Myers. Content-Aware Image Restoration: Pushing the Limits of Fluorescence Microscopy. Nature Methods, (15)12:1090--1097, 2018. [PUMA: imported] URL

Evangelia Skoufa, Jixing Zhong, Oliver Kahre, Kelly Hu, Georgios Tsissios, Louise Carrau, Antonio Herrera, Albert Dominguez Mantes, Alejandro Castilla-Ibeas, Hwanseok Jang, Martin Weigert, Gioele La Manno, Matthias Lutolf, Marian Ros, and Can Aztekin. Specialized signaling centers direct cell fate and spatial organization in a limb organoid model. bioRxiv, Cold Spring Harbor Laboratory, 2024. [PUMA: imported] URL

Michael Eisenstein. Smart solutions for automated imaging. Nature Methods, (17)11:1075--1079, Nature Publishing Group, 2020. [PUMA: imported]

Léo Bürgy, Martin Weigert, Georgios Hatzopoulos, Matthias Minder, Adrien Journé, Sahand Jamal Rahi, and Pierre Gönczy. CenFind: a deep-learning pipeline for efficient centriole detection in microscopy datasets. BMC bioinformatics, (24)1:1--10, BioMed Central, 2023. [PUMA: imported]

Albert Dominguez Mantes, Antonio Herrera, Irina Khven, Anjalie Schlaeppi, Eftychia Kyriacou, Georgios Tsissios, Can Aztekin, Joachim Ligner, Gioele La Manno, and Martin Weigert. Spotiflow: accurate and efficient spot detection for imaging-based spatial transcriptomics with stereographic flow regression. bioRxiv, 2024--02, Cold Spring Harbor Laboratory, 2024. [PUMA: imported]

Robert Haase, Loic A Royer, Peter Steinbach, Deborah Schmidt, Alexandr Dibrov, Uwe Schmidt, Martin Weigert, Nicola Maghelli, Pavel Tomancak, Florian Jug, and Eugene W. Myers. CLIJ: GPU-accelerated image processing for everyone. Nature Methods, (17)1:5--6, Nature Publishing Group, 2020. [PUMA: imported]

Michael Eisenstein. AI under the microscope: the algorithms powering the search for cells.. Nature, (623)7989:1095--1097, 2023. [PUMA: imported]

Byung Ho Lee, Kana Fuji, Heike Petzold, Phil Seymour, Siham Yennek, Coline Schewin, Allison Lewis, Daniel Riveline, Tetsuya Hiraiwa, Masaki Sano, and Anne Grapin-Botton. Control of lumen geometry and topology by the interplay between pressure and cell proliferation rate in pancreatic organoids. bioRxiv, Cold Spring Harbor Laboratory, 2024. [PUMA: Yaff imported] URL

Yuvaraj Natarajan, Gitanjali Wadhwa, Sri Preethaa K R, Karthic Sundaram, and Rama Abirami K. Advancing Sustainable IoT Appliance Load Monitoring Through Edge-Enabled Federated Transfer Learning. 2024 International Conference on Green Energy, Computing and Sustainable Technology (GECOST), 386-391, January 2024. [PUMA: Yaff imported]

Reza Nicknam, Seyyed Rouhollah Hadj Zargarbashi, and Abtin Safavipour. AI Development in Germany After the Publication of German Nation AI Strategy, Problems and Solutions. Journal of Humanities and Education Development, (6)5:68–81, AI Publications, 2024. [PUMA: Zno imported] URL

Prakash Gondode, Sakshi Duggal, and Vaishali Mahor. Artificial intelligence hallucinations in anaesthesia: Causes, consequences and countermeasures. Indian Journal of Anaesthesia, (68)7:658–661, Medknow, June 2024. [PUMA: Zno imported] URL

Patricia Evelyn Schlosser. Klangwelten neu gedacht : Zur Nutzung und Rolle von Künstlicher Intelligenz in der Musikproduktion. Universitäts- und Landesbibliothek Sachsen-Anhalt, 2024. [PUMA: Zno imported] URL

Gishnu Harikumar Parvathy, Dhananjay Bhandiwad, Lars Eggers, Linda von Borstel, Jochen Behrends, Martina Hein, David Hertz, Jaqueline Marschner, Zane Orinska, Stefan H E Kaufmann, Mario Alberto Flores-Valdez, Hanna Lotter, and Bianca E Schneider. Sex differences in vaccine induced immunity and protection againstMycobacterium tuberculosis. Cold Spring Harbor Laboratory, April 2024. [PUMA: Yaff imported] URL

Atharva Naik. On the Limitations of Embedding Based Methods for Measuring Functional Correctness for Code Generation. 2024. [PUMA: Zno imported] URL

Meysam Alishahi, and Jeff M. Phillips. No Dimensional Sampling Coresets for Classification. 2024. [PUMA: Yaff imported] URL

Aldo Acevedo, Yue Wu, Fabio Lorenzo Traversa, and Carlo Vittorio Cannistraci. Geometric separability of mesoscale patterns in embedding representation and visualization of multidimensional data and complex networks. PLOS Complex Systems, (1)2:1-28, Public Library of Science, October 2024. [PUMA: Yaff imported] URL

Jakob Rehof. LIPIcs, Volume 299, FSCD 2024, Complete Volume. Schloss Dagstuhl – Leibniz-Zentrum für Informatik, 2024. [PUMA: Xack Yaff imported] URL

C. Molinari, J. Bulgarelli, F. Rebuzzi, R. Camara, V. Kokala Dimitropoulou, E. Petracci, J. Ewald, D. Prascevic, P. Ulivi, M. Canale, M. Monti, S. Tamberi, and A. Derventzi. 16P The role of systemic immunity in locally advanced gastric cancer patients treated with neoadjuvant chemotherapy. ESMO Open, (9):103762, 2024. [PUMA: Yaff imported] URL

Patrick Ebel, Rochelle Schneider, Massimo Bonavita, Mariana Clare, Anna Jungbluth, Maryam Pourshamsi, Matthew Chantry, Mihai Alexe, Alessandro Sebastianelli, and Marcin Chrust. 2024 ESA-ECMWF workshop report: current status, progress and opportunities in machine learning for Earth system observation and prediction. npj Climate and Atmospheric Science, (7)1:241, Oct 9, 2024. [PUMA: Zno imported] URL

Maria Wyrzykowska, Gabriel della Maggiora, Nikita Deshpande, Ashkan Mokarian, and Artur Yakimovich. A Benchmark for Virus Infection Reporter Virtual Staining in Fluorescence and Brightfield Microscopy. Cold Spring Harbor Laboratory, September 2024. [PUMA: Xack imported] URL

Vaibhav Sharma, and Artur Yakimovich. A deep learning dataset for sample preparation artefacts detection in multispectral high-content microscopy. Scientific Data, (11)1:232, Feb 23, 2024. [PUMA: Xack imported] URL

Mariana Madruga de Brito, Jan Sodoge, Zora Reckhaus, Miguel Mahecha, and Christian Kuhlicke. Analyzing impact cascades: an integrative approach for assessing the interconnected effects of extreme events across sectors and systems. EGU General Assembly Conference Abstracts, 1496, April 2024. [PUMA: Yaff imported]

Gabriela Araujo-Pardo, Marston Conder, Natalia García-Colín, György Kiss, and Dimitri Leemans. A note on girth-diameter cages. 2024. [PUMA: Yaff imported] URL

Nicolas-Domenic Reiter, Jonas Wahl, Gabriele C. Hegerl, and Jakob Runge. Asymptotic Uncertainty in the Estimation of Frequency Domain Causal Effects for Linear Processes. 2024. [PUMA: Yaff imported] URL

Michael Faerber, David Lamprecht, and Yuni Susanti. AutoRDF2GML: Facilitating RDF Integration in Graph Machine Learning. In Gianluca Demartini, Katja Hose, Maribel Acosta, Matteo Palmonari, Gong Cheng, Hala Skaf-Molli, Nicolas Ferranti, Daniel Hernández, and Aidan Hogan (Eds.), The Semantic Web -- ISWC 2024, 115--133, Springer Nature Switzerland, Cham, 2025. [PUMA: Yaff imported]

Jens Lehmann, Dhananjay Bhandiwad, Preetam Gattogi, and Sahar Vahdati. Beyond Boundaries: A Human-like Approach for Question Answering over Structured and Unstructured Information Sources. Transactions of the Association for Computational Linguistics, (12):786--802, MIT Press, Cambridge, MA, 2024. [PUMA: Yaff imported] URL

Greg Eisenhauer, Norbert Podhorszki, Ana Gainaru, Scott Klasky, Philip E. Davis, Manish Parashar, Matthew Wolf, Eric Suchtya, Erick Fredj, Vicente Bolea, Franz Pöschel, Klaus Steiniger, Michael Bussmann, Richard Pausch, and Sunita Chandrasekaran. Streaming Data in HPC Workflows Using ADIOS. 2024. [PUMA: Zno imported] URL

Jeremy J. Williams, Daniel Medeiros, Stefan Costea, David Tskhakaya, Franz Poeschel, René Widera, Axel Huebl, Scott Klasky, Norbert Podhorszki, Leon Kos, Ales Podolnik, Jakub Hromadka, Tapish Narwal, Klaus Steiniger, Michael Bussmann, Erwin Laure, and Stefano Markidis. Enabling High- Throughput Parallel I/O in Particle-in-Cell Monte Carlo Simulations with openPMD and Darshan I/O Monitoring. 2024 IEEE International Conference on Cluster Computing Workshops (CLUSTER Workshops), 86-95, September 2024. [PUMA: Zno imported]

Anshu Ankolekar, Sebastian Boie, Maryam Abdollahyan, Emanuela Gadaleta, Seyed Alireza Hasheminasab, Guang Yang, Charles Beauville, Nikolaos Dikaios, George Anthony Kastis, Michael Bussmann, Sara Khalid, Hagen Kruger, Philippe Lambin, and Giorgos Papanastasiou. Advancing oncology with federated learning: transcending boundaries in breast, lung, and prostate cancer. A systematic review. 2024. [PUMA: Zno imported] URL

Dieter Weber, Simeon Ehrig, Andreas Schropp, Alexander Clausen, Silvio Achilles, Nico Hoffmann, Michael Bussmann, Rafal E Dunin-Borkowski, and Christian G Schroer. Live Iterative Ptychography. Microscopy and Microanalysis, (30)1:103–117, Oxford University Press (OUP), February 2024. [PUMA: Iterative Live Ptychography Zno imported] URL

Beth Russell, Katharina Beyer, Ailbhe Lawlor, Monique J. Roobol, Lionne D.F. Venderbos, Sebastiaan Remmers, Erik Briers, Sara J. MacLennan, Steven MacLennan, Muhammad Imran Omar, Mieke Van Hemelrijck, Emma Smith, James N’Dow, Karin Plass, Maria Ribal, Nicolas Mottet, Robert Shepherd, Tom Abbott, Ken Mastris, Lisa Moris, Michael Lardas, Thomas Van den Broeck, Peter-Paul Willemse, Nicola Fossati, Karl Pang, Riccardo Campi, Isabella Greco, Mauro Gacci, Sergio Serni, Anders Bjartell, Ragnar Lonnerbro, Alberto Briganti, Daniele Crosti, Roberto Garzonio, Giorgio Gandaglia, Martina Faticoni, Grant office, Chris Bangma, Maria Jongerden, Derya Tilki, Anssi Auvinen, Teemu Murtola, Tapio Visakorpi, Kirsi Talala, Teuvo Tammela, Aino Siltari, Stephane Lejeune, Laurence Colette, Simona Caputova, Delielena Poli, Sophie Byrne, Luz Fialho, Ashley Rowland, Neo Tapela, Nicola Di Flora, Kathi Apostolidis, Valerie Lemair, Bertrand De Meulder, Charles Auffray, Nesrine Taibi, Ayman Hijazy, Albert Saporta, Kai Sun, Shaun Power, Nazanin Zounemat Kermani, Kees van Bochove, Azadeh Tafreshiha, Chiara Bernini, Denis Horgan, Louise Fullwood, Marc Holtorf, Doron Lancet, Gabi Bernstein, Sheela Tripathee, Manfred Wirth, Michael Froehner, Beate Brenner, Angelika Borkowetz, Christian Thomas, Friedemann Horn, Kristin Reiche, Markus Kreuz, Andreas Josefsson, Delila Gasi Tandefelt, Jonas Hugosson, Jack Schalken, Henkjan Huisman, Thomas Hofmarcher, Peter Lindgren, Emelie Andersson, Adam Fridhammar, Monica Tames Grijalva, Susan Evans-Axelsson, Frank Verholen, Jihong Zong, John-Edward Butler-Ransohoff, Todd Williamson, Reg Waldeck, Amanda Bruno, Ekaterina Nevedomskaya, Samuel Fatoba, Niculae Constantinovici, Carl Steinbeisser, Monika Maass, Patrizia Torremante, Emmanuelle Dochy, Federica Pisa, Marc Dietrich Voss, Kishore Papineni, Jing Wang silvanto, Robert Snijder, Xuewei Wang, Mark Lambrecht, Russ Wolfinger, Sherinne Eid, Soundarya Palanisamy, Samiul Haque, Laurent Antoni, Angela Servan, Katie Pascoe, Paul Robinson, Joana Lencart, Bertrand Jaton, Heidi Turunen, Olavi Kilkku, Pasi Pohjanjousi, Olli Voima, Liina Nevalaita, Keijo Punakivi, Sarah Seager, Shilpa Ratwani, Katarzyna Grzeslak, James Brash, Elaine Longden-Chapman, Danny Burke, Muriel Licour, Sarah Payne, Alan Yong, Flavia Lujan, Sophia Le Mare, Jan Hendrich, Michael Bussmann, Juckeland, Kotik, Delielena Poli, and Christian Reich. Survivorship Data in Prostate Cancer: Where Are We and Where Do We Need To Be?. European Urology Open Science, (59):27–29, Elsevier BV, January 2024. [PUMA: Cancer: Data Prostate Survivorship Zno imported] URL

Klaus Steiniger, Rene Widera, Sergei Bastrakov, Michael Bussmann, Sunita Chandrasekaran, Benjamin Hernandez, Kristina Holsapple, Axel Huebl, Guido Juckeland, Jeffrey Kelling, Matt Leinhauser, Richard Pausch, David Rogers, Ulrich Schramm, Jeff Young, and Alexander Debus. EZ: An efficient, charge conserving current deposition algorithm for electromagnetic particle-in-cell simulations. Computer Physics Communications, (291):108849, 2023. [PUMA: Charge Current EZ PIConGPU Particle-in-cell Zno conservation deposition imported] URL

Wael Elwasif, William Godoy, Nick Hagerty, J. Austin Harris, Oscar Hernandez, Balint Joo, Paul Kent, Damien Lebrun-Grandie, Elijah Maccarthy, Veronica Melesse Vergara, Bronson Messer, Ross Miller, Sarp Oral, Sergei Bastrakov, Michael Bussmann, Alexander Debus, Klaus Steiniger, Jan Stephan, Rene Widera, Spencer Bryngelson, Henry Le Berre, Anand Radhakrishnan, Jeffrey Young, Sunita Chandrasekaran, Florina Ciorba, Osman Simsek, Kate Clark, Filippo Spiga, Jeff Hammond, Stone John, David Hardy, Sebastian Keller, Jean-Guillaume Piccinali, and Christian Trott. Application Experiences on a GPU-Accelerated Arm-based HPC Testbed. Proceedings of the HPC Asia 2023 Workshops, 35–49, Association for Computing Machinery, New York, NY, USA, 2023. [PUMA: Zno imported] URL

Anna Willmann, Jurjen Couperus Cabadağ, Yen-Yu Chang, Richard Pausch, Amin Ghaith, Alexander Debus, Arie Irman, Michael Bussmann, Ulrich Schramm, and Nico Hoffmann. Learning Electron Bunch Distribution along a FEL Beamline by Normalising Flows. 2023. [PUMA: Bunch Distribution Electron Learning Zno imported] URL

Brian Edward Marré, Ulrich Schramm, Michael Bussmann, Thomas Kluge, Thomas Cowan, René Widera, Sergei Bastrakov, and Axel Huebl. Atomic population kinetics for Particle in Cell. 2023. [PUMA: Atomic Zno imported kinetics population]

Peer-Timo Bremer, Brian Spears, Tom Gibbs, and Michael Bussmann. AI-Augmented Facilities: Bridging Experiment and Simulation with ML (Dagstuhl Seminar 23132). Schloss Dagstuhl – Leibniz-Zentrum für Informatik, 2023. [PUMA: AI-Augmented Facilities Zno imported] URL

Bernhard Manfred Gruber, Guilherme Amadio, Jakob Blomer, Alexander Matthes, René Widera, and Michael Bussmann. LLAMA: The low‐level abstraction for memory access. Software: Practice and Experience, (53)1:115–141, Wiley, March 2022. [PUMA: LLAMA Zno access imported memory] URL

Patrick Stiller, Varun Makdani, Franz Pöschel, Richard Pausch, Alexander Debus, Michael Bussmann, and Nico Hoffmann. Continual learning autoencoder training for a particle-in-cell simulation via streaming. 2022. [PUMA: Continual Zno autoencoder imported learning particle-in-cell simulation training] URL

J. N’Dow, E.J. Smith, K. Polychronopoulos, A. Cannon, M. Roobol, S. Auweter, M. Thomas, A. Kremer, B. De Meulder, D. Dellamonica, D.P. Alhambra, A. Asiimwe, M. Bussmann, X. Ji, P. Torremante, S. Keller, F. Kube, and H. Krueger. 917P OPTIMA: Improve care for patients with prostate, breast, and lung cancer through artificial intelligence. Annals of Oncology, (33):S966, Elsevier BV, September 2022. [PUMA: 917P OPTIMA Zno imported] URL

Accelerator Programming Using Directives: 8th International Workshop, WACCPD 2021, Virtual Event, November 14, 2021, Proceedings. In Sridutt Bhalachandra, Christopher Daley, and Verónica Melesse Vergara (Eds.), Springer-Verlag, Berlin, Heidelberg, 2021. [PUMA: 2021 Accelerator Programming WACCPD Zno imported nopdf]

Franz Lehr, Heike Dietmann, Chiara Krisam, and Melanie Volkamer. Manipulative Designs von Cookies. Datenschutz und Datensicherheit - DuD, (46)5:296--300, May 1, 2022. [PUMA: Yaff cookies designs imported manipulative] URL

Mirza Mohtashim Alam, Md Rashad Al Hasan Rony, Mojtaba Nayyeri, Karishma Mohiuddin, M. S. T. Mahfuja Akter, Sahar Vahdati, and Jens Lehmann. Language Model Guided Knowledge Graph Embeddings. IEEE Access, (10):76008-76020, 2022. [PUMA: Yaff imported]

Gotthard Meinel, Sujit Kumar Sikder, and Tobias Krueger. IOER Monitor: A Spatio-Temporal Research Data Infrastructure on Settlement and Open Space Development in Germany. Jahrbücher für Nationalökonomie und Statistik, (242)1:159--170, 2022. [PUMA: imported zno] URL

Kushal Ramakrishna, Attila Cangi, Jan Vorberger, Andrew Baczewski, Mani Lokamani, and None Team. Electrical Conductivity of Iron in Earth’s Core from Microscopic Ohm’s Law. (2022)2022. [PUMA: imported xack]

Franz Baader, Patrick Koopmann, Friedrich Michel, Anni-Yasmin Turhan, and Benjamin Zarriess. Efficient TBox Reasoning with Value Restrictions Using the ℱℒower Reasoner. In O. Arieli, M. Homola, J.C. Jung, and M.-L. Mugnier (Eds.), DL 2022 - Proceedings of the 35th International Workshop on Description Logics, co-located with Federated Logic Conference, FLoC 2022, (3263)CEUR-WS, 2022. [PUMA: imported zno]

Mojtaba Nayyeri, Sahar Vahdati, Md Tansen Khan, Mirza Mohtashim Alam, Lisa Wenige, Andreas Behrend, and Jens Lehmann. Dihedron Algebraic Embeddings for Spatio-Temporal Knowledge Graph Completion. In Paul Groth, Maria-Esther Vidal, Fabian Suchanek, Pedro Szekley, Pavan Kapanipathi, Catia Pesquita, Hala Skaf-Molli, and Minna Tamper (Eds.), The Semantic Web, 253--269, Springer International Publishing, Cham, 2022. [PUMA: imported xack]

Md Rashad Al Hasan Rony, Ricardo Usbeck, and Jens Lehmann. DialoKG: Knowledge-Structure Aware Task-Oriented Dialogue Generation. 2557-2571, January 2022. [PUMA: imported xack]

Raven Beutner, David Carral, Bernd Finkbeiner, Jana Hofmann, and Markus Krötzsch. Deciding Hyperproperties Combined with Functional Specifications. Proceedings of the 37th Annual ACM/IEEE Symposium on Logic in Computer Science, 1–13, Association for Computing Machinery, New York, NY, USA, Aug 4, 2022. [PUMA: imported xack] URL

Lucas Woltmann, Peter Volk, Michael Dinzinger, Lukas Gräf, Sebastian Strasser, Johannes Schildgen, Claudio Hartmann, and Wolfgang Lehner. Data Science Meets High-Tech Manufacturing – The BTW 2021 Data Science Challenge. Datenbank-Spektrum, (22)December 2021. [PUMA: Yaff imported]

Md Rashad Al Hasan Rony, Ying Zuo, Liubov Kovriguina, Roman Teucher, and Jens Lehmann. Climate Bot: A Machine Reading Comprehension System for Climate Change Question Answering. Proceedings of the Thirty-First International Joint Conference on Artificial Intelligence, 5249–5252, International Joint Conferences on Artificial Intelligence Organization, July 2022. [PUMA: imported xack] URL

Wolfgang Lehner, Kai-Uwe Sattler, and Johann-Christoph Freytag. BTW2021 erstmals als digitale Vortragsreihe. Datenbank-Spektrum, (22)1:67--71, Mar 1, 2022. [PUMA: imported zno] URL

Piotr Ostropolski-Nalewaja, Jerzy Marcinkowski, David Carral, and Sebastian Rudolph. A Journey to the Frontiers of Query Rewritability. In Leonid Libkin, and Pablo Barceló (Eds.), Proceedings of the 41st Symposium on Principles of Database Systems (PODS'22), 359-367, ACM, June 2022. [PUMA: imported xack]

Somnath Dutta, Benjamin Russig, and Stefan Gumhold. 3D Point Set Registration based on Hierarchical Descriptors. Journal of WSCG, (30):44-53, August 2022. [PUMA: imported xack]

Wiebke Günther, Oana-Iuliana Popescu, Martin Rabel, Urmi Ninad, Andreas Gerhardus, and Jakob Runge. Causal discovery with endogenous context variables. 2024. [PUMA: imported xack] URL

Patrick Ebel, Pavlo Bazilinskyy, Mark Colley, Courtney Michael Goodridge, Philipp Hock, Christian Janssen, Hauke Sandhaus, Aravinda Ramakrishnan Srinivasan, and Philipp Wintersberger. Changing Lanes Toward Open Science: Openness and Transparency in Automotive User Research. Center for Open Science, July 2024. [PUMA: imported yaff] URL

Daniel Obraczka, and Erhard Rahm. Comparing Symbolic and Embedding-Based Approaches for Relational Blocking. In Mehwish Alam, Marco Rospocher, Marieke van Erp, Laura Hollink, and Genet Asefa Gesese (Eds.), Knowledge Engineering and Knowledge Management - 24th International Conference, EKAW 2024, Amsterdam, The Netherlands, November 26-28, 2024, Proceedings, (15370):155--173, Springer, 2024. [PUMA: imported xack] URL

K. Debeire, L. Bock, P. Nowack, J. Runge, and V. Eyring. Constraining uncertainty in projected precipitation over land with causal discovery. EGUsphere, (2024):1--32, 2024. [PUMA: imported yaff] URL

Ensieh Aliagha, Najdet Charaf, Nitin Krishna Venkatesan, and Diana Göhringer. DA-CGRA: Domain-Aware Heterogeneous Coarse-Grained Reconfigurable Architecture for the Edge. 2024 27th Euromicro Conference on Digital System Design (DSD), 410-417, August 2024. [PUMA: imported xack]

Callum J. R. Murphy-Barltrop, Reetam Majumder, and Jordan Richards. Deep Learning of Multivariate Extremes via a Geometric Representation. 2024. [PUMA: imported yaff] URL

Martin Kutz. Der Tragödie erster Teil?. Ethik und Gesellschaft, Nr. 1 (2024): Ge|teilte Wirklichkeit, Ethik und Gesellschaft, 2024. [PUMA: imported yaff] URL

Anika Hannemann, Benjamin Friedl, and Erik Buchmann. Differentially Private Multi-Label Learning Is Harder Than You'd Think. 2024 IEEE European Symposium on Security and Privacy Workshops (EuroS&PW), 40-47, July 2024. [PUMA: imported yaff]

Melissa Sanabria, Jonas Hirsch, and Anna R. Poetsch. Distinguishing word identity and sequence context in DNA language models. BMC Bioinformatics, (25)1:301, Sep 13, 2024. [PUMA: imported xack] URL

Julian Striegl, Sebastian Rottmann, and Claudia Loitsch. Effectiveness and Acceptance of Conversational Agent-based Psychotherapy for Depression and Anxiety Treatment: Methodological Literature Review. February 2024. [PUMA: imported nopdf]

Clemens Witt, Thiemo Leonhardt, Erik Marx, and Nadine Bergner. From Guesswork to Game Plan: Exploring Problem-Solving-Strategies in a Machine Learning Game. In Zsuzsa Pluhár, and Bence Gaál (Eds.), Informatics in Schools. Innovative Approaches to Computer Science Teaching and Learning, 73--84, Springer Nature Switzerland, Cham, 2025. [PUMA: imported nopdf]

Jiaxin Huang, Bernhard Vogginger, Florian Kelber, Hector Gonzalez, Klaus Knobloch, and Christian Georg Mayr. Fast Switching Serial and Parallel Paradigms of SNN Inference on Multi-core Heterogeneous Neuromorphic Platform SpiNNaker2. 2024. [PUMA: imported xack] URL

Lukas Gerlach, David Carral, and Markus Hecher. Finite Groundings for ASP with Functions: A Journey through Consistency. 2024. [PUMA: imported xack] URL

Parian-Scherb, Mahnaz, Uhrig, Peter, Rossetto, Luca, Dupont, Stephane, and Schuldt, Heiko. Gesture retrieval and its application to the study of multimodal communication. Springer, 2024. [PUMA: imported yaff] URL

Jeronimo Castrillon. High-level programming abstractions and compilation for near and in-memory computing. August 2024. [PUMA: imported yaff]

Brinda Vallat, Benjamin M. Webb, John D. Westbrook, Thomas D. Goddard, Christian A. Hanke, Andrea Graziadei, Ezra Peisach, Arthur Zalevsky, Jared Sagendorf, Hongsuda Tangmunarunkit, Serban Voinea, Monica Sekharan, Jian Yu, Alexander A.M.J.J. Bonvin, Frank DiMaio, Gerhard Hummer, Jens Meiler, Emad Tajkhorshid, Thomas E. Ferrin, Catherine L. Lawson, Alexander Leitner, Juri Rappsilber, Claus A.M. Seidel, Cy M. Jeffries, Stephen K. Burley, Jeffrey C. Hoch, Genji Kurisu, Kyle Morris, Ardan Patwardhan, Sameer Velankar, Torsten Schwede, Jill Trewhella, Carl Kesselman, Helen M. Berman, and Andrej Sali. IHMCIF: An Extension of the PDBx/mmCIF Data Standard for Integrative Structure Determination Methods. Journal of Molecular Biology, 168546, March 2024. [PUMA: imported xack] URL

Anahy Santiago Arguello, and Peter F Stadler. Whitney's connectivity inequalities for directed hypergraphs. The Art of Discrete and Applied Mathematics, (5)1:P1--01, 2022. [PUMA: imported zno]