Publications

Abhinav Singh, Philipp H. Suhrcke, Pietro Incardona, and Ivo F. Sbalzarini. A numerical solver for active hydrodynamics in three dimensions and its application to active turbulence. Physics of fluids, (35)10American Institute of Physics, Oct 1, 2023. [PUMA: FIS_scads imported topic_lifescience Xack Yaff]

Suryanarayana Maddu, Dominik Sturm, Bevan L. Cheeseman, Christian L. Müller, and Ivo F. Sbalzarini. STENCIL-NET for equation-free forecasting from data. Scientific reports, (13)1Nature Publishing Group, December 2023. [PUMA: FIS_scads imported topic_lifescience Xack Yaff]

Abhinav Singh, Quentin Vagne, Frank Jülicher, and Ivo F. Sbalzarini. Spontaneous flow instabilities of active polar fluids in three dimensions. Physical Review Research, (5)2American Physical Society, College Park, April 2023. [PUMA: FIS_scads imported topic_lifescience Yaff]

Negin Malekian, Srividhya Sainath, Ali Al-Fatlawi, and Michael Schroeder. Word-based GWAS harnesses the rich potential of genomic data for E. coli quinolone resistance. Frontiers in microbiology, (14):1276332, Frontiers Media S.A., 2023. [PUMA: FIS_scads imported topic_lifescience Yaff]

Chaithra Umesh, Manjunath Mahendra, Saptarshi Bej, Olaf Wolkenhauer, and Markus Wolfien. Challenges and applications in generative AI for clinical tabular data in physiology. Pflügers Archiv : European journal of physiology, Springer, Berlin u. a., Oct 17, 2024. [PUMA: FIS_scads imported topic_lifescience Yaff]

Najia Ahmadi, Michele Zoch, Patricia Kelbert, Richard Noll, Jannik Schaaf, Markus Wolfien, and Martin Sedlmayr. Methods Used in the Development of Common Data Models for Health Data: Scoping Review. JMIR medical informatics, (11)JMIR Publications Inc., Aug 3, 2023. [PUMA: FIS_scads imported topic_lifescience Zno]

Katja Hoffmann, Igor Nesterow, Yuan Peng, Elisa Henke, Daniela Barnett, Cigdem Klengel, Mirko Gruhl, Martin Bartos, Frank Nüßler, Richard Gebler, Sophia Grummt, Anne Seim, Franziska Bathelt, Ines Reinecke, Markus Wolfien, Jens Weidner, and Martin Sedlmayr. Streamlining intersectoral provision of real-world health data: a service platform for improved clinical research and patient care. Frontiers in medicine, (11):1377209, Frontiers Media S.A., 2024. [PUMA: FIS_scads imported topic_lifescience Zno]

Suse Seidemann, Florian Salomon, Karl B Hoffmann, Thomas Kurth, Ivo F Sbalzarini, Robert Haase, and Marius Ader. Automated quantification of photoreceptor outer segments in developing and degenerating retinas on microscopy images across scales. FRONTIERS IN MOLECULAR NEUROSCIENCE, (17 (2024))Frontiers Media S.A., May 24, 2024. [PUMA: FIS_scads imported topic_lifescience unit_transfer Yaff]

Chiara Molinari, Leonardo Solaini, Francesca Rebuzzi, Gianluca Tedaldi, Davide Angeli, Elisabetta Petracci, Dusan Prascevic, Jan Ewald, Erhard Rahm, Matteo Canale, and others. Genomic events stratifying prognosis of early gastric cancer. Gastric Cancer, 1--12, Springer, 2024. [PUMA: area_bigdata ep imported topic_lifescience Xack Yaff]

R Haase, Klaus Zöphel, Michael Andreeff, Jörg Steinbach, Jörg Kotzerke, and N Abolmaali. Usefulness of voxel-wise Pearson correlation coefficient for reproducibility and repeatability measurements in PET. Nuklearmedizin, 2012. [PUMA: imported topic_lifescience]

Johannes Girstmair, HongKee Moon, Charlène Brillard, Robert Haase, and Pavel Tomancak. Time to upgrade: A new OpenSPIM guide to build and operate advanced OpenSPIM configurations. Advanced biology, (6)4:2101182, 2022. [PUMA: imported topic_lifescience]

Chong Zhang, Alban Gaignard, Matus Kalas, Florian Levet, Felipe Delestro, Joakim Lindblad, Natasa Sladoje, Laure Plantard, Alain Latour, Robert Haase, and others. Bio-Image Informatics Index BIII: A unique database of image analysis tools and workflows for and by the bioimaging community. arXiv preprint arXiv:2312.11256, 2023. [PUMA: imported topic_lifescience]

Metin Gabriel Davutoglu, Veikko F Geyer, Lukas Niese, Johannes R Soltwedel, Marcelo L Zoccoler, Robert Haase, Nils Kroeger, Stefan Diez, and Nicole Poulsen. Gliding motility of the diatom Craspedostauros australis correlates with the intracellular movement of raphid-specific myosins. bioRxiv, 2024--03, Cold Spring Harbor Laboratory, 2024. [PUMA: imported topic_lifescience]

Robert Haase, Akanksha Jain, Stéphane Rigaud, Daniela Vorkel, Pradeep Rajasekhar, Theresa Suckert, Talley J Lambert, Juan Nunez-Iglesias, Daniel P Poole, Pavel Tomancak, and others. Interactive design of GPU-accelerated image data flow graphs and cross-platform deployment using multi-lingual code generation. bioRxiv, 2020--11, Cold Spring Harbor Laboratory, 2020. [PUMA: imported topic_lifescience]

Merlin Lange, Alejandro Granados, Shruthi VijayKumar, Jordão Bragantini, Sarah Ancheta, Yang-Joon Kim, Sreejith Santhosh, Michael Borja, Hirofumi Kobayashi, Erin McGeever, and others. A multimodal zebrafish developmental atlas reveals the state-transition dynamics of late-vertebrate pluripotent axial progenitors. Cell, (187)23:6742--6759, Elsevier, 2024. [PUMA: imported topic_lifescience]

Daniela Vorkel, and Robert Haase. GPU-accelerating ImageJ Macro image processing workflows using CLIJ. Bioimage Data Analysis Workflows--Advanced Components and Methods, 89--114, Springer International Publishing Cham, 2022. [PUMA: imported topic_lifescience]

Johannes Soltwedel, Theresa Suckert, Elke Beyreuther, Moritz Schneider, Marc Boucsein, Elisabeth Bodenstein, Sindi Nexhipi, Liane Stolz-Kieslich, Mechthild Krause, Cläre von Neubeck, and others. Slice2Volume: Fusion of multimodal medical imaging and light microscopy data of irradiation-injured brain tissue in 3D. Radiotherapy and Oncology, (182):109591, Elsevier, 2023. [PUMA: imported topic_lifescience]

Robert Haase. Image processing filters for grids of cells analogous to filters processing grids of pixels. Frontiers in Computer Science, 105, Frontiers, 2021. [PUMA: imported topic_lifescience]

Rebecca Bütof, Steffen Löck, Maher Soliman, Robert Haase, Rosalind Perrin, Christian Richter, Steffen Appold, Mechthild Krause, and Michael Baumann. Dose--volume predictors of early esophageal toxicity in non-small cell lung cancer patients treated with accelerated-hyperfractionated radiotherapy. Radiotherapy and Oncology, (143):44--50, Elsevier, 2020. [PUMA: imported topic_lifescience]

R Haase, R Perrin, K Zöphel, H-J Böhme, N Abolmaali, and others. Swarm intelligence allows automatic volume analysis basing on low contrast 18 F-fluoromisonidazole-PET of head and neck cancer patients. 2013. [PUMA: imported topic_lifescience]