Publications

Mikael Vejdemo-Johansson, CUNY College of Staten Island, and 2800 Victory Boulevard, 1S-215, Staten Island, NY 10314, USA, Sayan Mukherjee, CUNY Graduate Center, 365 5th Avenue, and New York NY 10016, USA, Center for Scalable Data Analytics and and Artificial Intelligence, Universit¨at Leipzig, and Humboldtstraße 25, Leipzig, Germany 04105, Max Planck and Institute for Mathematics in the Sciences, Inselstraße 22 and 04103 Leipzig Germany, and Departments of Statistical Science, and Mathematics, Computer Science, and Biostatistics & and Bioinformatics, Duke University, Durham, NC 27708, USA. Multiple hypothesis testing with persistent homology. Found. Data Sci., (4)4:667--705, American Institute of Mathematical Sciences (AIMS), 2022. [PUMA: Multiple homology hypothesis persistent testing;]

Mikael Vejdemo-Johansson, CUNY College of Staten Island, and 2800 Victory Boulevard, 1S-215, Staten Island, NY 10314, USA, Sayan Mukherjee, CUNY Graduate Center, 365 5th Avenue, and New York NY 10016, USA, Center for Scalable Data Analytics and and Artificial Intelligence, Universit¨at Leipzig, and Humboldtstraße 25, Leipzig, Germany 04105, Max Planck and Institute for Mathematics in the Sciences, Inselstraße 22 and 04103 Leipzig Germany, and Departments of Statistical Science, and Mathematics, Computer Science, and Biostatistics & and Bioinformatics, Duke University, Durham, NC 27708, USA. Multiple hypothesis testing with persistent homology. Found. Data Sci., (4)4:667--705, American Institute of Mathematical Sciences (AIMS), 2022. [PUMA: homology testing; hypothesis from:scadsfct Multiple persistent]

Pranav Kodali, Clara T Schoeder, Samuel Schmitz, James E Crowe, Jr, and Jens Meiler. RosettaCM for antibodies with very long HCDR3s and low template availability. Proteins, (89)11:1458--1472, Wiley, November 2021. [PUMA: Rosetta; antibody; benchmark; homology loop modeling; prediction; structure topic_lifescience]

Fabian Liessmann, Georg Künze, and Jens Meiler. Improving the modeling of extracellular ligand binding pockets in RosettaGPCR for conformational selection. Int. J. Mol. Sci., (24)9April 2023. [PUMA: Rosetta; RosettaGPCR; discovery; docking; drug homology ligand modeling; pocket refinement topic_lifescience]