Publications

Robson P Bonidia, Anderson P Avila Santos, Breno L S de Almeida, Peter F Stadler, Ulisses N da Rocha, Danilo S Sanches, and André C P L F de Carvalho. BioAutoML: automated feature engineering and metalearning to predict noncoding RNAs in bacteria. Briefings in Bioinformatics, (23)4Oxford University Press (OUP), June 2022. [PUMA: BioAutoML RNAs Zno automated bacteria engineering metalearning noncoding predict] URL

Johannes Pahlke, and Ivo F. Sbalzarini. A Unifying Mathematical Definition of Particle Methods. IEEE open journal of the computer society : an open access publication of the IEEE Computer Society, (4):97--108, Institute of Electrical and Electronics Engineers Inc., 2023. [PUMA: topic_lifescience Algorithmics, FIS_scads algorithms, definition, engineering formal mesh-free methods, parallelization, particle simulation software]

Johannes Pahlke, and Ivo Sbalzarini. Proven Distributed Memory Parallelization of Particle Methods. ACM Trans. Parallel Comput., Association for Computing Machinery, New York, NY, USA, Sep 18, 2024. [PUMA: topic_lifescience algorithmics, algorithms, bounds, definition, distributed engineering formal memory, meshfree methods, parallelization, particle scalability simulation software] URL