NetPU-M: a Generic Reconfigurable Neural Network Accelerator Architecture for MLPs. 2023 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), 85-92, 2023. [PUMA: zno]
Developing open-source software for bioimage analysis: opportunities and challenges. F1000Research, (10)Faculty of 1000 Ltd, 2021. [PUMA: zno]
Correlation between FMISO-PET based hypoxia in the primary tumour and in lymph node metastases in locally advanced HNSCC patients. Clinical and translational radiation oncology, (15):108--112, Elsevier, 2019. [PUMA: zno]
Precise image-guided irradiation of small animals: a flexible non-profit platform. Physics in Medicine & Biology, (61)8:3084, IOP Publishing, 2016. [PUMA: zno]
Highlights from the 2016-2020 NEUBIAS training schools for Bioimage Analysts: a success story and key asset for analysts and life scientists. F1000Research, (10)Faculty of 1000 Ltd, 2021. [PUMA: zno]
NTCP reduction for advanced head and neck cancer patients using proton therapy for complete or sequential boost treatment versus photon therapy. Acta Oncologica, (54)9:1658--1664, Taylor & Francis, 2015. [PUMA: zno]
The RNA binding protein human antigen R is a gatekeeper of liver homeostasis. Hepatology, (75)4:881--897, 2022. [PUMA: zno]
CLIJ: GPU-accelerated image processing for everyone. Nature methods, (17)1:5--6, Nature Publishing Group US New York, 2020. [PUMA: zno]
EDAM-bioimaging: The ontology of bioimage informatics operations, topics, data, and formats (update 2020). ELIXIR All Hands 2020, 2020. [PUMA: zno]
Regionalized tissue fluidization is required for epithelial gap closure during insect gastrulation. Nature communications, (11)1:5604, Nature Publishing Group UK London, 2020. [PUMA: zno]
A hitchhiker's guide through the bio-image analysis software universe. Febs Letters, (596)19:2472--2485, 2022. [PUMA: zno]
Roadmap on Deep Learning for Microscopy. 2023. [PUMA: Deep_Learning Microscopy Roadmap zno] URL
Star-convex polyhedra for 3D object detection and segmentation in microscopy. Proceedings of the IEEE/CVF winter conference on applications of computer vision, 3666--3673, 2020. [PUMA: zno]
The prognostic value of FMISO-PET-based synchronous tumor and lymph node hypoxia outperforms that of tumor hypoxia only in patients with advanced stage HNSSC-secondary analysis of Dresden FMISO trail. ONCOLOGY RESEARCH AND TREATMENT, (41):186--186, 2018. [PUMA: zno]
FMISO-PET-based lymph node hypoxia adds to the prognostic value of tumor only hypoxia in HNSCC patients. Radiotherapy and Oncology, (130):97--103, Elsevier, 2019. [PUMA: zno]
High-precision image-guided proton irradiation of mouse brain sub-volumes. Radiotherapy and Oncology, (146):205--212, Elsevier, 2020. [PUMA: zno]
Zebrahub--Multimodal zebrafish developmental atlas reveals the State-transition dynamics of late-vertebrate pluripotent axial progenitors. BioRxiv, 2023--03, Cold Spring Harbor Laboratory, 2023. [PUMA: zno]
NanoPyx: super-fast bioimage analysis powered by adaptive machine learning. bioRxiv, 2023--08, Cold Spring Harbor Laboratory, 2023. [PUMA: zno]
Physical correction model for automatic correction of intensity non-uniformity in magnetic resonance imaging. Physics and Imaging in Radiation Oncology, (4):32--38, Elsevier, 2017. [PUMA: zno]
Prognostic value of baseline 18F-fluorodeoxyglucose positron emission tomography parameters MTV, TLG and asphericity in an international multicenter cohort of nasopharyngeal carcinoma patients. PloS one, (15)7:e0236841, Public Library of Science San Francisco, CA USA, 2020. [PUMA: zno]
Spatial distribution of FMISO in head and neck squamous cell carcinomas during radio-chemotherapy and its correlation to pattern of failure. Acta Oncologica, (54)9:1355--1363, Taylor & Francis, 2015. [PUMA: zno]
Meeting in the middle: towards successful multidisciplinary bioimage analysis collaboration. Frontiers in bioinformatics, (2):889755, Frontiers Media SA, 2022. [PUMA: zno]
Exogenous ethanol induces a metabolic switch that prolongs the survival of Caenorhabditis elegans dauer larva and enhances its resistance to desiccation. Aging Cell, (19)10:e13214, 2020. [PUMA: zno]
Open microscopy in the life sciences: quo vadis?. Nature methods, (19)9:1020--1025, Nature Publishing Group US New York, 2022. [PUMA: zno]
FDG uptake in normal tissues assessed by PET during treatment has prognostic value for treatment results in head and neck squamous cell carcinomas undergoing radiochemotherapy. Radiotherapy and Oncology, (122)3:437--444, Elsevier, 2017. [PUMA: zno]
Gliding motility of the diatom Craspedostauros australis coincides with the intracellular movement of raphid-specific myosins. Communications Biology, (7)1:1187, Nature Publishing Group UK London, 2024. [PUMA: zno]
Challenges and opportunities for bioimage analysis core-facilities. Journal of Microscopy, (294)3:338--349, 2024. [PUMA: zno]
Bat teeth illuminate the diversification of mammalian tooth classes. bioRxiv, 2021--12, Cold Spring Harbor Laboratory, 2021. [PUMA: zno]
Analysis of actomyosin dynamics at local cellular and tissue scales using time-lapse movies of cultured drosophila egg chambers. JoVE (Journal of Visualized Experiments), 148:e58587, 2019. [PUMA: zno]
Evaluation of a deformable registration algorithm for subsequent lung computed tomography imaging during radiochemotherapy. Medical Physics, (43)9:5028--5039, American Association of Physicists in Medicine, 2016. [PUMA: zno]
Dose--volume predictors of early esophageal toxicity in non-small cell lung cancer patients treated with accelerated-hyperfractionated radiotherapy. Radiotherapy and Oncology, (143):44--50, Elsevier, 2020. [PUMA: zno]
Image processing filters for grids of cells analogous to filters processing grids of pixels. Frontiers in Computer Science, 105, Frontiers, 2021. [PUMA: zno]
Slice2Volume: Fusion of multimodal medical imaging and light microscopy data of irradiation-injured brain tissue in 3D. Radiotherapy and Oncology, (182):109591, Elsevier, 2023. [PUMA: zno]
GPU-accelerating ImageJ Macro image processing workflows using CLIJ. Bioimage Data Analysis Workflows--Advanced Components and Methods, 89--114, Springer International Publishing Cham, 2022. [PUMA: zno]
A multimodal zebrafish developmental atlas reveals the state-transition dynamics of late-vertebrate pluripotent axial progenitors. Cell, (187)23:6742--6759, Elsevier, 2024. [PUMA: zno]
Interactive design of GPU-accelerated image data flow graphs and cross-platform deployment using multi-lingual code generation. bioRxiv, 2020--11, Cold Spring Harbor Laboratory, 2020. [PUMA: zno]
Bio-Image Informatics Index BIII: A unique database of image analysis tools and workflows for and by the bioimaging community. arXiv preprint arXiv:2312.11256, 2023. [PUMA: zno]
Gliding motility of the diatom Craspedostauros australis correlates with the intracellular movement of raphid-specific myosins. bioRxiv, 2024--03, Cold Spring Harbor Laboratory, 2024. [PUMA: zno]
Time to upgrade: A new OpenSPIM guide to build and operate advanced OpenSPIM configurations. Advanced biology, (6)4:2101182, 2022. [PUMA: zno]
3-D fluid channel location from noise tremors using matched field processing. Geophysical Journal International, (219)3:1550--1561, Oxford University Press, 2019. [PUMA: zno]
Drilling into an active mofette: pilot-hole study of the impact of CO 2-rich mantle-derived fluids on the geo--bio interaction in the western Eger Rift (Czech Republic). Scientific Drilling, (23):13--27, Copernicus Publications Göttingen, Germany, 2017. [PUMA: zno]
North Atlantic influence on Holocene flooding in the southern Greater Caucasus. The Holocene, (28)4:609--620, SAGE Publications Sage UK: London, England, 2018. [PUMA: zno]
Analysis of Node Failures in High Performance Computers Based on System Logs. International Conference for High Performance Computing, Networking, Storage and Analysis (SC), Austin, Texas, USA, November 2015. [PUMA: zno] URL
BGP Beacons, Network Tomography, and Bayesian Computation to Locate Route Flap Damping. 492-505, 2020. [PUMA: zno]
DeepFeatures: Remote sensing beyond spectral indices. EGU General Assembly Conference Abstracts, 18852, 2024. [PUMA: zno]
Delineating Standing Deadwood in High-Resolution RGB Drone Imagery. EGU24-190252024. [PUMA: zno]
High-resolution mapping of tree mortality in European forests. EGU24-20213Copernicus Meetings, 2024. [PUMA: zno]
deadtrees.earth - an open, dynamic database for accessing, contributing, analyzing, and visualizing remote sensing-based tree mortality data. EGU24-155022024. [PUMA: zno]
Revisiting Recommended BGP Route Flap Damping Configurations. (5):22, 2021. [PUMA: zno]
Synergetic use of Sentinel-1 and Sentinel-2 data for large-scale Land Use/Land Cover Mapping. EGU General Assembly Conference Abstracts, EGU22-4300, 2022. [PUMA: zno]
Composable and reusable neural surrogates to predict system response of causal model components. 2021. [PUMA: zno]
Reducing Load Imbalance of Virtual Clusters via Reconfiguration and Adaptive Job Scheduling. Proceedings of the 17th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID), 992--999, IEEE, Madrid, Spain, May 2017. [PUMA: zno] URL
Towards Adaptive Resilience in High Performance Computing. In E. Grosspietsch, and K. Kloeckner (Eds.), Proceedings of WiP in 25th EUROMICRO International Conference on Parallel, Distributed and Network-based Processing, (1):5--6, SEA-Publications-Austria, St. Petersburg, Russia, March 2017. [PUMA: zno]
Anonymization of System Logs for Preserving Privacy and Reducing Storage. Proceedings of the 2018 Future of Information and Communications Conference (FICC), (1):440--447, Springer, Singapore, April 2018. [PUMA: zno]
Lessons Learned from Spatial and Temporal Correlation of Node Failures in High Performance Computers. Proceedings of the 24th Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (PDP), 377--381, IEEE, Heraklion, Crete, Greece, February 2016. [PUMA: zno] URL
Turning Privacy Constraints into Syslog Analysis Advantage. International Conference for High Performance Computing, Networking, Storage and Analysis (SC), Salt Lake City, Utah, USA, November 2016. [PUMA: zno] URL
A Light-weight and Unsupervised Method for Near Real-time Behavioral Analysis using Operational Data Measurement. The International Conference for High Performance Computing, Networking, Storage, and Analysis, Dallas, Texas, USA, January 2022. [PUMA: Zno] URL
Composing modeling and simulation with machine learning in Julia. 1-17, IEEE, 2022. [PUMA: zno]
The potential of machine learning for modeling spatio-temporal properties of water isotopologue distributions in precipitation. EGU General Assembly Conference Abstracts, EGU21-2979, 2021. [PUMA: zno]
Intermediate filaments ensure resiliency of single carcinoma cells, while active contractility of the actin cortex determines their invasive potential. New Journal of Physics, (23)8:083028, IOP Publishing, 2021. [PUMA: zno]
Anatomy of the fetal membranes: Insights from spinning disk confocal microscopy. Archives of Gynecology and Obstetrics, (309)5:1919-1923, Springer Berlin Heidelberg, 2024. [PUMA: zno]
Rapid prototyping of 3D biochips for cell motility studies using two-photon polymerization. Frontiers in bioengineering and biotechnology, (9):664094, Frontiers Media SA, 2021. [PUMA: zno]
Urban Water Demand Modeling Using Machine Learning Techniques: Case Study of Fortaleza, Brazil. Journal of Water Resources Planning and Management, (147)1:05020026, American Society of Civil Engineers, 2021. [PUMA: zno]
Application of stochastic dual dynamic programming in operation optimization of the Jaguaribe-Metropolitano reservoirs system. 2019. [PUMA: zno]
Water demand modeling using machine learning techniques. 2019. [PUMA: zno]
Avaliação do uso de cisternas como medida compensatória para atenuação de picos de cheia na Bacia do Pajeú utilizando o SWMM. 2017. [PUMA: zno]
Integrated model of capacity expansion and operation of water supply systems including non-conventional water sources. 2019. [PUMA: zno]
Uncovering the influence of hydrological and climate variables in chlorophyll-A concentration in tropical reservoirs with machine learning. Environmental Science and Pollution Research, (29)49:74967-74982, Springer Berlin Heidelberg, 2022. [PUMA: zno]
Vulnerability index to COVID-19: Fortaleza, Brazil study case. Engenharia Sanitaria e Ambiental, (26):731-739, Associação Brasileira de Engenharia Sanitária e Ambiental-ABES, 2021. [PUMA: zno]
Modelagem dinâmica espacial aplicada à previsão da demanda hídrica. ABRHidro-Associação Brasileira de Recursos Hidrícos, http://www. abrhidro. org. br/xxivsbrh, 2021. [PUMA: zno]
Hydrological risk of dam failure under climate change. RBRH, (27):e19, Associação Brasileira de Recursos Hídricos, 2022. [PUMA: zno]
Identification of correlation between residential demand and average income using pool regression model. 2019. [PUMA: zno]
Mapeamento da produção científica internacional sobre previsão da demanda hídrica urbana. ABRHidro-Associação Brasileira de Recursos Hidrícos, http://www. abrhidro. org. br/xxivsbrh, 2021. [PUMA: zno]
Use of Machine Learning in Evaluation of Drought Perception in Irrigated Agriculture: The Case of an Irrigated Perimeter in Brazil. Water, (12)6:1546, Multidisciplinary Digital Publishing Institute, 2020. [PUMA: zno]
Análise do desempenho de valas de infiltração para controle pluvial em cenários de mudanças climáticas: estudo de caso Fortaleza (CE). Revista DAE, (72)245:01-12, 2024. [PUMA: zno]
Detecção de secas e visualização de padrões climáticos com aprendizado de máquina. ABRHidro-Associação Brasileira de Recursos Hidrícos, http://www. abrhidro. org. br/xxivsbrh, 2021. [PUMA: zno]
Diversification of urban water supply: An assessment of social costs and water production costs. Water Policy, (24)6:980-997, IWA Publishing, 2022. [PUMA: zno]
Exploring the relationship between climate indices and hydrological time series using a machine learning approach. 2019. [PUMA: zno]
Integrated proactive drought management in hydrosystems and cities: building a nine-step participatory planning methodology. Natural Hazards: Journal of the International Society for the Prevention and Mitigation of Natural Hazards, (115)3:2179-2204, Springer, 2023. [PUMA: zno]
Machine Learning for Water Resources Management. 2023. [PUMA: zno]
A GLM copula approach for multisite annual streamflow generation. Journal of Hydrology, (598):126226, Elsevier, 2021. [PUMA: zno]
A data-driven model to evaluate the medium-term effect of contingent pricing policies on residential water demand. Environmental Challenges, (3):100033, Elsevier, 2021. [PUMA: zno]
Quantifying sensitivity to drought: Study case in São Paulo and Ceará, Brazil. 2019. [PUMA: zno]
Deutsches Netzwerk für Bioinformatik Infrastruktur, de. NBI, RNA Bioinformatics Center-Leipzig. Professur für Bioinformatik, Institut für Informatik, Universität Leipzig, 2022. [PUMA: Bioinformatics Bioinformatik Infrastruktur Netzwerk RNA nopdf zno]
Water management assessment with text mining. EGU General Assembly Conference Abstracts, EGU-8349, 2023. [PUMA: Zno topic_earthenvironment]
Identification of correlation between residential water demand and average income using the pool regression model: Study case in Fortaleza-Brazil. Water Utility Journal, 2020. [PUMA: zno]
Variational Mode Decomposition Hybridized With Gradient Boost Regression for Seasonal Forecast of Residential Water Demand. Water Resources Management, (35)10:3431-3445, Springer Netherlands, 2021. [PUMA: zno]
Integrated proactive drought management in hydrosystems and cities: building a nine-step participatory planning methodology. Natural Hazards: Journal of the International Society for the Prevention and Mitigation of Natural Hazards, (115)3:2179-2204, Springer & International Society for the Prevention and Mitigation of Natural Hazards, 2023. [PUMA: zno]
From insufficient rainfall to livelihoods: understanding the cascade of drought impacts and policy implications. EGUsphere, (2024):1-20, Copernicus Publications, 2024. [PUMA: zno]
On-Demand Earth System Data Cubes. IGARSS 2024 - 2024 IEEE International Geoscience and Remote Sensing Symposium, 7529–7532, IEEE, July 2024. [PUMA: zno] URL
Citizen science plant observations encode global trait patterns. Nature Ecology & Evolution, (6)12:1850–1859, Springer Science and Business Media LLC, October 2022. [PUMA: zno] URL
Biodiversity and Climate Extremes: Known Interactions and Research Gaps. Earth’s Future, (12)6American Geophysical Union (AGU), June 2024. [PUMA: zno] URL
Lexcube: Interactive Visualization of Large Earth System Data Cubes. IEEE Computer Graphics and Applications, (44)1:25–37, Institute of Electrical and Electronics Engineers (IEEE), January 2024. [PUMA: zno] URL
Text mining uncovers the unique dynamics of socio-economic impacts of the 2018–2022 multi-year drought in Germany. Natural Hazards and Earth System Sciences, (24)5:1757–1777, Copernicus GmbH, May 2024. [PUMA: Zno] URL
Estimating transpiration globally by integrating the Priestley-Taylor model with neural networks. Environ. Res. Lett., (19)11:114089, IOP Publishing, November 2024. [PUMA: zno]
Explainable Earth Surface Forecasting under Extreme Events. arXiv, 2024. [PUMA: zno] URL
Temporal dynamics in vertical leaf angles can confound vegetation indices widely used in Earth observations. Communications Earth & Environment, (5)1Springer Science and Business Media LLC, October 2024. [PUMA: zno] URL
Simulation-based inference as a paradigm for scientific machine learning in the cryosphere and beyond. Copernicus GmbH, March 2024. [PUMA: zno] URL
A new climate impact database using generative AI. Copernicus GmbH, November 2024. [PUMA: zno] URL
Technical Note: The divide and measure nonconformity – how metrics can mislead when we evaluate on different data partitions. Hydrology and Earth System Sciences, (28)15:3665–3673, Copernicus GmbH, August 2024. [PUMA: zno] URL