Publications

Merlin Lange, Alejandro Granados, Shruthi VijayKumar, Jordão Bragantini, Sarah Ancheta, Yang-Joon Kim, Sreejith Santhosh, Michael Borja, Hirofumi Kobayashi, Erin McGeever, Robert Haase, and others. A multimodal zebrafish developmental atlas reveals the state-transition dynamics of late-vertebrate pluripotent axial progenitors. Cell, (187)23:6742--6759, Elsevier, 2024. [PUMA: topic_lifescience zno]

Merlin Lange, Alejandro Granados, Shruthi VijayKumar, Jordao Bragantini, Sarah Ancheta, Sreejith Santhosh, Michael Borja, Hirofumi Kobayashi, Erin McGeever, Ahmet Can Solak, Robert Haase, and others. Zebrahub--Multimodal zebrafish developmental atlas reveals the State-transition dynamics of late-vertebrate pluripotent axial progenitors. BioRxiv, 2023--03, Cold Spring Harbor Laboratory, 2023. [PUMA: topic_lifescience zno]

Johannes Soltwedel, Theresa Suckert, Elke Beyreuther, Moritz Schneider, Marc Boucsein, Elisabeth Bodenstein, Sindi Nexhipi, Liane Stolz-Kieslich, Mechthild Krause, Cläre von Neubeck, Robert Haase, and others. Slice2Volume: Fusion of multimodal medical imaging and light microscopy data of irradiation-injured brain tissue in 3D. Radiotherapy and Oncology, (182):109591, Elsevier, 2023. [PUMA: topic_lifescience zno]

Joel Jonsson, Bevan L. Cheeseman, Suryanarayana Maddu, Krzysztof Gonciarz, and Ivo F. Sbalzarini. Parallel Discrete Convolutions on Adaptive Particle Representations of Images. IEEE Transactions on Image Processing, (31):4197--4212, Wiley-IEEE Press, Jan 1, 2022. [PUMA: topic_lifescience zno]

Johannes Pahlke, and Ivo F. Sbalzarini. A Unifying Mathematical Definition of Particle Methods. IEEE open journal of the computer society : an open access publication of the IEEE Computer Society, (4):97--108, Institute of Electrical and Electronics Engineers Inc., 2023. [PUMA: Algorithmics topic_lifescience zno]

Waldemar Hahn, Najia Ahmadi, Katja Hoffmann, Jan-Niklas Eckardt, Martin Sedlmayr, and Markus Wolfien. Synthetic Data Generation in Hematology - Paving the Way for OMOP and FHIR Integration. Studies in health technology and informatics, (316):1472--1476, IOS Press, Amsterdam u. a., Aug 22, 2024. [PUMA: topic_lifescience zno]

Najia Ahmadi, Michele Zoch, Patricia Kelbert, Richard Noll, Jannik Schaaf, Markus Wolfien, and Martin Sedlmayr. Methods Used in the Development of Common Data Models for Health Data: Scoping Review. JMIR medical informatics, (11)JMIR Publications Inc., Aug 3, 2023. [PUMA: FIS_scads imported topic_lifescience zno]

Markus Wolfien, Najia Ahmadi, Kai Fitzer, Sophia Grummt, Kilian-Ludwig Heine, Ian-C Jung, Dagmar Krefting, Andreas Kühn, Yuan Peng, Ines Reinecke, Julia Scheel, Tobias Schmidt, Paul Schmücker, Christina Schüttler, Dagmar Waltemath, Michele Zoch, and Martin Sedlmayr. Ten Topics to Get Started in Medical Informatics Research. Journal of Medical Internet Research, (25)JMIR Publications Inc., Jul 24, 2023. [PUMA: topic_lifescience zno]

Katja Hoffmann, Yuan Peng, Tobias Schlosser, Gabriel Stolze, Holger Langner, Marcel Susky, Trixy Meyer, Marc Ritter, Danny Kowerko, Vinodh Kakkassery, Markus Wolfien, and Martin Sedlmayr. Towards Standardizing Ophthalmic Data for Seamless Interoperability in Eye Care. Studies in health technology and informatics, (317):139--145, IOS Press, Amsterdam u. a., Aug 30, 2024. [PUMA: topic_lifescience zno]

Katja Hoffmann, Igor Nesterow, Yuan Peng, Elisa Henke, Daniela Barnett, Cigdem Klengel, Mirko Gruhl, Martin Bartos, Frank Nüßler, Richard Gebler, Sophia Grummt, Anne Seim, Franziska Bathelt, Ines Reinecke, Markus Wolfien, Jens Weidner, and Martin Sedlmayr. Streamlining intersectoral provision of real-world health data: a service platform for improved clinical research and patient care. Frontiers in medicine, (11):1377209, Frontiers Media S.A., 2024. [PUMA: FIS_scads imported topic_lifescience zno]

Edward W. Lowe, Mariusz Butkiewicz, Matthew Spellings, Albert Omlor, and Jens Meiler. Comparative analysis of machine learning techniques for the prediction of logP. 2011 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), 1–6, IEEE, April 2011. [PUMA: imported topic_lifescience zno] URL

Julia Koehler, Ralf Mueller, and Jens Meiler. Improved prediction of trans-membrane spans in proteins using an artificial neural network. 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 68–74, IEEE, March 2009. [PUMA: imported topic_lifescience zno] URL

Mariusz Butkiewicz, Edward Lowe, Ralf Mueller, Jeffrey Mendenhall, Pedro Teixeira, C. Weaver, and Jens Meiler. Benchmarking Ligand-Based Virtual High-Throughput Screening with the PubChem Database. Molecules, (18)1:735–756, MDPI AG, January 2013. [PUMA: imported topic_lifescience zno] URL

J. Meiler, R. Meusinger, and M. Will. Fast Determination of 13C NMR Chemical Shifts Using Artificial Neural Networks. Journal of Chemical Information and Computer Sciences, (40)5:1169–1176, American Chemical Society (ACS), August 2000. [PUMA: imported topic_lifescience zno] URL

Mariusz Butkiewicz, Edward W. Lowe, and Jens Meiler. Bcl∷ChemInfo - Qualitative analysis of machine learning models for activation of HSD involved in Alzheimer’s Disease. 2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), 329–334, IEEE, May 2012. [PUMA: imported topic_lifescience zno] URL

E. W. Lowe, M. Butkiewicz, N. Woetzel, and J. Meiler. GPU-accelerated machine learning techniques enable QSAR modeling of large HTS data. 2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), 314–320, IEEE, May 2012. [PUMA: imported topic_lifescience zno] URL

Mariusz Butkiewicz, Ralf Mueller, Danilo Selic, Eric Dawson, and Jens Meiler. Application of machine learning approaches on quantitative structure activity relationships. 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 255–262, IEEE, March 2009. [PUMA: imported topic_lifescience zno] URL

Benjamin P. Brown, Jeffrey Mendenhall, Alexander R. Geanes, and Jens Meiler. General Purpose Structure-Based Drug Discovery Neural Network Score Functions with Human-Interpretable Pharmacophore Maps. Journal of Chemical Information and Modeling, (61)2:603–620, American Chemical Society (ACS), January 2021. [PUMA: imported topic_lifescience zno] URL

Edward W. Lowe, Alysia Ferrebee, Alice L. Rodriguez, P. Jeffrey Conn, and Jens Meiler. 3D-QSAR CoMFA study of benzoxazepine derivatives as mGluR5 positive allosteric modulators. Bioorganic & Medicinal Chemistry Letters, (20)19:5922–5924, Elsevier BV, October 2010. [PUMA: imported topic_lifescience zno] URL

Jeffrey Mendenhall, and Jens Meiler. Improving quantitative structure–activity relationship models using Artificial Neural Networks trained with dropout. Journal of Computer-Aided Molecular Design, (30)2:177–189, Springer Science and Business Media LLC, February 2016. [PUMA: imported topic_lifescience zno] URL