Publications

Riccardo Tommasini, Christopher Rost, Angela Bonifati, Emanuele Della Valle, Erhard Rahm, Keith W. Hare, Stefan Plantikow, Petra Selmer, and Hannes Voigt. Property Graph Stream Processing In Action with Seraph. Companion of the 2024 International Conference on Management of Data, 492–495, Association for Computing Machinery, New York, NY, USA, Jun 9, 2024. [PUMA: area_bigdata topic_graph yaff] URL

Nadja Meumann, Marti Cabanes-Creus, Moritz Ertelt, Renina Gale Navarro, Julie Lucifora, Qinggong Yuan, Karin Nien-Huber, Ahmed Abdelrahman, Xuan-Khang Vu, Liang Zhang, and others. Adeno-associated virus serotype 2 capsid variants for improved liver-directed gene therapy. Hepatology, (77)3:802--815, LWW, 2023. [PUMA: imported topic_lifescience yaff]

Antonia Sophia Peter, Dieter S Hoffmann, Johannes Klier, Christina M Lange, Johanna Möller, Victoria Most, Christina K Wüst, Max Beining, Sevilay Gülesen, Hannes Junker, Jens Meiler, Clara Schoeder, and others. Strategies of rational and structure-driven vaccine design for Arenaviruses. Infection, Genetics and Evolution, 105626, Elsevier, 2024. [PUMA: imported xack yaff]

Moritz Ertelt, Vikram Khipple Mulligan, Jack B. Maguire, Sergey Lyskov, Rocco Moretti, Torben Schiffner, Jens Meiler, and Clara T. Schoeder. Combining machine learning with structure-based protein design to predict and engineer post-translational modifications of proteins. In Joanna Slusky (Eds.), PLOS Computational Biology, (20)3:e1011939, Public Library of Science (PLoS), March 2024. [PUMA: imported topic_lifescience xack yaff] URL

Shan Jiang, Zhaoqian Su, Nathaniel Bloodworth, Yunchao Liu, Cristina Martina, David G. Harrison, and Jens Meiler. Machine learning application to predict binding affinity between peptide containing non-canonical amino acids and HLA0201. Cold Spring Harbor Laboratory, November 2024. [PUMA: imported topic_lifescience xack yaff] URL

D. Sala, F. Engelberger, H.S. Mchaourab, and J. Meiler. Modeling conformational states of proteins with AlphaFold. Current Opinion in Structural Biology, (81):102645, Elsevier BV, August 2023. [PUMA: imported topic_lifescience yaff] URL

Moritz Ertelt, Rocco Moretti, Jens Meiler, and Clara T. Schoeder. Self-supervised machine learning methods for protein design improve sampling, but not the identification of high-fitness variants. Cold Spring Harbor Laboratory, June 2024. [PUMA: imported topic_lifescience xack yaff] URL

Nandan Thakur, Luiz Bonifacio, Maik Fröbe, Alexander Bondarenko, Ehsan Kamalloo, Martin Potthast, Matthias Hagen, and Jimmy Lin. Systematic Evaluation of Neural Retrieval Models on the Touché 2020 Argument Retrieval Subset of BEIR. Proceedings of the 47th International ACM SIGIR Conference on Research and Development in Information Retrieval, 1420–1430, ACM, July 2024. [PUMA: imported topic_language yaff] URL

Michael Granitzer, Stefan Voigt, Noor Afshan Fathima, Martin Golasowski, Christian Guetl, Tobias Hecking, Gijs Hendriksen, Djoerd Hiemstra, Jan Martinovic, Jelena Mitrović, and others. Impact and development of an Open Web Index for open web search. Journal of the Association for Information Science and Technology, (75)5:512--520, Wiley Online Library, 2024. [PUMA: imported topic_language yaff]

Sheikh Mastura Farzana, Maik Fröbe, Michael Granitzer, Gijs Hendriksen, Djoerd Hiemstra, Martin Potthast, and Saber Zerhoudi. The First International Workshop on Open Web Search (WOWS). European Conference on Information Retrieval, 426--431, 2024. [PUMA: imported topic_language yaff]

Abibe Useini, Inken Kaja Schwerin, Georg Künze, and Norbert Sträter. Structural Studies on the Binding Mode of Bisphenols to PPARγ. Biomolecules, (14)6:640, MDPI AG, May 2024. [PUMA: imported topic_lifescience xack yaff] URL

Palina Pliushcheuskaya, Sandeep Kesh, Emma Kaufmann, Sophie Wucherpfennig, Frank Schwede, Georg Künze, and Vasilica Nache. Similar Binding Modes of cGMP Analogues Limit Selectivity in Modulating Retinal CNG Channels via the Cyclic Nucleotide-Binding Domain. ACS Chemical Neuroscience, (15)8:1652–1668, American Chemical Society (ACS), April 2024. [PUMA: imported topic_lifescience yaff] URL

Rodolfo A. Maniero, Cristiana Picco, Anja Hartmann, Felipe Engelberger, Antonella Gradogna, Joachim Scholz-Starke, Michael Melzer, Georg Künze, Armando Carpaneto, Nicolaus von Wirén, and Ricardo F. H. Giehl. Ferric reduction by a CYBDOM protein counteracts increased iron availability in root meristems induced by phosphorus deficiency. Nature Communications, (15)1Springer Science and Business Media LLC, January 2024. [PUMA: imported topic_lifescience yaff] URL

Kortney Melancon, Palina Pliushcheuskaya, Jens Meiler, and Georg Künze. Targeting ion channels with ultra-large library screening for hit discovery. Frontiers in Molecular Neuroscience, (16)Frontiers Media SA, January 2024. [PUMA: imported topic_lifescience xack yaff] URL

Shahbaz Syed, Ahmad Hakimi, Khalid Al-Khatib, and Martin Potthast. Citance-Contextualized Summarization of Scientific Papers. In Houda Bouamor, Juan Pino, and Kalika Bali (Eds.), Findings of the Association for Computational Linguistics: EMNLP 2023, 8551--8568, Association for Computational Linguistics, Singapore, December 2023. [PUMA: imported topic_language yaff] URL

Maik Fröbe, Harrisen Scells, Theresa Elstner, Christopher Akiki, Lukas Gienapp, Jan Heinrich Reimer, Sean MacAvaney, Benno Stein, Matthias Hagen, and Martin Potthast. Resources for Combining Teaching and Research in Information Retrieval Coursework. Proceedings of the 47th International ACM SIGIR Conference on Research and Development in Information Retrieval, 1115–1125, ACM, July 2024. [PUMA: topic_language yaff] URL

Shahbaz Syed, Khalid Al Khatib, and Martin Potthast. TL;DR Progress: Multi-faceted Literature Exploration in Text Summarization. In Nikolaos Aletras, and Orphee De Clercq (Eds.), Proceedings of the 18th Conference of the European Chapter of the Association for Computational Linguistics: System Demonstrations, 195--206, Association for Computational Linguistics, St. Julians, Malta, March 2024. [PUMA: topic_language yaff] URL

Eva Zangerle, Maximilian Mayerl, Martin Potthast, and Benno Stein. Overview of the Multi-Author Writing Style Analysis Task at PAN 2023.. CLEF (Working Notes), 2513--2522, 2023. [PUMA: topic_language yaff]

Abinew Ali Ayele, Nikolay Babakov, Janek Bevendorff, Xavier Bonet Casals, Berta Chulvi, Daryna Dementieva, Ashaf Elnagar, Dayne Freitag, Maik Fröbe, Damir Korencić, and others. Overview of PAN 2024: Multi-author Writing Style Analysis, Multilingual Text Detoxification, Oppositional Thinking Analysis, and Generative AI Authorship Verification Condensed Lab Overview. International Conference of the Cross-Language Evaluation Forum for European Languages, 231--259, 2024. [PUMA: topic_language yaff]

Johannes Kiesel, Cagrı Cöltekin, Maximilian Heinrich, Maik Fröbe, Milad Alshomary, Bertrand De Longueville, Tomaz Erjavec, Nicolas Handke, Matyás Kopp, Nikola Ljubesić, and others. Overview of Touché 2024: Argumentation Systems. 2024. [PUMA: topic_language yaff]