Publications

Yuhao Liu, Shubham Rai, Salim Ullah, and Akash Kumar. High-Flexibility Designs of Quantized Runtime Reconfigurable Multi-Precision Multipliers. IEEE Embedded Systems Letters, (15)4:194-197, 2023. [PUMA: yaff]

Yuhao Liu, Salim Ullah, and Akash Kumar. BitSys: Bitwise Systolic Array Architecture for Multi-precision Quantized Hardware Accelerators. 2024 IEEE 32nd Annual International Symposium on Field-Programmable Custom Computing Machines (FCCM), 220-220, 2024. [PUMA: yaff]

Florens Rohde, Victor Christen, Martin Franke, and Erhard Rahm. Multi-Layer Privacy-Preserving Record Linkage with Clerical Review based on gradual information disclosure. Datenbanksysteme für Business, Technologie und Web (BTW 2025), 393--415, Gesellschaft für Informatik, Bonn, 2025. [PUMA: privacy xack yaff]

Suse Seidemann, Florian Salomon, Karl Hoffmann, Thomas Kurth, Ivo F Sbalzarini, Robert Haase, and Marius Ader. Automated Quantification of Photoreceptor Outer Segments in Developing and Degenerating Retinas on Microscopic Images across Scales. Investigative Ophthalmology & Visual Science, (65)7:5878--5878, The Association for Research in Vision and Ophthalmology, 2024. [PUMA: yaff]

Annika Reinke, Minu D Tizabi, Carole H Sudre, Matthias Eisenmann, Tim Rädsch, Michael Baumgartner, Laura Acion, Michela Antonelli, Tal Arbel, Spyridon Bakas, and others. Common limitations of image processing metrics: A picture story. arXiv preprint arXiv:2104.05642, 2021. [PUMA: yaff]

Lena Maier-Hein, Annika Reinke, Patrick Godau, Minu D Tizabi, Florian Buettner, Evangelia Christodoulou, Ben Glocker, Fabian Isensee, Jens Kleesiek, Michal Kozubek, and others. Metrics reloaded: recommendations for image analysis validation. Nature methods, (21)2:195--212, Nature Publishing Group US New York, 2024. [PUMA: yaff]

Lucrezia C Ferme, Allyson Q Ryan, Robert Haase, Carl D Modes, and Caren Norden. Timely neurogenesis enables increased nuclear packing order during neuronal lamination. bioRxiv, 2024--11, Cold Spring Harbor Laboratory, 2024. [PUMA: yaff]

Matthias Arzt, Joran Deschamps, Christopher Schmied, Tobias Pietzsch, Deborah Schmidt, Pavel Tomancak, Robert Haase, and Florian Jug. LABKIT: labeling and segmentation toolkit for big image data. Frontiers in computer science, (4):777728, Frontiers, 2022. [PUMA: yaff]

Luke Sorensen, Adam Humenick, Sabrina SB Poon, Myat Noe Han, Narges S Mahdavian, Matthew C Rowe, Ryan Hamnett, Estibaliz Gómez-de Mariscal, Peter H Neckel, Ayame Saito, and others. Gut Analysis Toolbox--automating quantitative analysis of enteric neurons. Journal of Cell Science, (137)20The Company of Biologists, 2024. [PUMA: yaff]

Daria Alexander, Maik Fröbe, Ferdinand Schlatt, Matthias Hagen, Djoerd Hiemstra, Martin Potthast, and Arjen Paul de Vries. Team OpenWebSearch at CLEF 2024: LongEval. Working Notes Papers of the CLEF 2024 Evaluation Labs, September 2024. [PUMA: topic_language yaff]

Maik Fröbe, Jan Heinrich Reimer, Sean MacAvaney, Niklas Deckers, Janek Bevendorff, Benno Stein, Matthias Hagen, and Martin Potthast. The Information Retrieval Experiment Platform (Extended Abstract). In Kate Larson (Eds.), 33rd International Joint Conference on Artificial Intelligence (IJCAI 2024), 8405--8410, International Joint Conferences on Artificial Intelligence Organization, August 2024. [PUMA: yaff] URL

Ringo Baumann, Matti Berthold, Dov M. Gabbay, and Odinaldo Rodrigues. Forgetting in Abstract Argumentation: Limits and Possibilities. Journal of Artificial Intelligence Research, (82)2025. [PUMA: abstract_argumentation argumentation forgetting topic_knowledge xack yaff] URL

Matti Berthold. On Syntactic Forgetting with relativized Strong Persistence. In Nina Gierasimczuk, and Jesse Heyninck (Eds.), Proceedings of the 22nd International Workshop on Nonmonotonic Reasoning (NMR 2024) co-located with 21st International Conference on Principles of Knowledge Representation and Reasoning (KR 2024), Hanoi, Vietnam, November 2-4, 2024, (3835):173--182, CEUR-WS.org, 2024. [PUMA: answer_set_programming forgetting logic_programming topic_knowledge xack yaff] URL

Julia Peters, Anja Neumann, Marco Jaeger, Lukas Gienapp, and Josefine Umlauft. ml4xcube: Machine Learning Toolkits for Earth System Data Cubes. EarthArXiv, 2024. [PUMA: yaff]

Matti Wiegmann, Benno Stein, and Martin Potthast. De-Noising Document Classification Benchmarks via Prompt-based Rank Pruning: A Case Study. In Lorraine Goeuriot, Philippe Mulhem, Georges Quénot, Didier Schwab, Giorgio Maria Di Nunzio, Laure Soulier, Petra Galuscakova, Alba García Seco de Herrera, Guglielmo Faggioli, and Nicola Ferro (Eds.), Experimental IR Meets Multilinguality, Multimodality, and Interaction. 15th International Conference of the CLEF Association (CLEF 2024), (14958):172-178, Springer, Berlin Heidelberg New York, September 2024. [PUMA: yaff]

Arno Simons, Wolfgang Kircheis, Marion Schmidt, Martin Potthast, and Benno Stein. Who are the ``Heroes of CRISPR''? Public Science Communication on Wikipedia and the Challenge of Micro-Notability. Public Understanding of Science, (33)7:918--934, SAGE, October 2024. [PUMA: yaff]

Janek Bevendorff, Matti Wiegmann, Jussi Karlgren, Luise Dürlich, Evangelia Gogoulou, Aarne Talman, Efstathios Stamatatos, Martin Potthast, and Benno Stein. Overview of the ``Voight-Kampff'' Generative AI Authorship Verification Task at PAN and ELOQUENT 2024. In Guglielmo Faggioli, Nicola Ferro, Petra Galuscáková, and Alba García Seco de Herrera (Eds.), Working Notes of CLEF 2024 -- Conference and Labs of the Evaluation Forum, 2486-2506, CEUR-WS.org, September 2024. [PUMA: yaff] URL

Maik Fröbe, Daria Alexander, Gijs Hendriksen, Ferdinand Schlatt, Matthias Hagen, and Martin Potthast. Team OpenWebSearch at CLEF 2024: QuantumCLEF. Working Notes Papers of the CLEF 2024 Evaluation Labs, September 2024. [PUMA: yaff]

Lukas Gienapp, Niklas Deckers, Martin Potthast, and Harrisen Scells. Learning Effective Representations for Retrieval Using Self-Distillation with Adaptive Relevance Margins. CoRR, (abs/2407.21515)August 2024. [PUMA: xack yaff] URL

Andrew Parry, Maik Fröbe, Sean MacAvaney, Martin Potthast, and Matthias Hagen. Analyzing Adversarial Attacks on Sequence-to-Sequence Relevance Models. Advances in Information Retrieval. 46th European Conference on IR Research (ECIR 2024), Springer, Berlin Heidelberg New York, March 2024. [PUMA: yaff]

Timon Ziegenbein, Shahbaz Syed, Martin Potthast, and Henning Wachsmuth. Objective Argument Summarization in Search. In Philipp Cimiano, Anette Frank, Michael Kohlhase, and Benno Stein (Eds.), 1st International Conference on Recent Advances in Robust Argumentation Machines (RATIO-24), (14638):335--351, Springer, June 2024. [PUMA: yaff]

Michał Patryk Miazga, Daniel Abitz, Matthias Täschner, and Erhard Rahm. Automated Configuration of Schema Matching Tools: A Reinforcement Learning Approach. Datenbanksysteme für Business, Technologie und Web (BTW 2025), 331--354, Gesellschaft für Informatik, Bonn, 2025. [PUMA: topic_lifescience xack yaff]

David A. Selby, Maximilian Sprang, Jan Ewald, and Sebastian J. Vollmer. Beyond the black box with biologically informed neural networks. Nature Reviews Genetics, Mar 4, 2025. [PUMA: topic_lifescience yaff] URL

Tim Hagen, Harrisen Scells, and Martin Potthast. Revisiting Query Variation Robustness of Transformer Models. 29th Conference on Empirical Methods in Natural Language Processing (EMNLP 2024) (Findings), Association for Computational Linguistics, December 2024. [PUMA: topic_language yaff]

Max Weber, Christian Kaltenecker, Florian Sattler, Sven Apel, and Norbert Siegmund. Is Performance a Reliable Proxy for Energy Consumption?. Software Engineering 2024 (SE 2024), 99--100, 2024. [PUMA: topic_software yaff]

Daniel Mederer, Hannes Feilhauer, Eya Cherif, Katja Berger, Tobias B. Hank, Kyle R. Kovach, Phuong D. Dao, Bing Lu, Philip A. Townsend, and Teja Kattenborn. Plant trait retrieval from hyperspectral data: Collective efforts in scientific data curation outperform simulated data derived from the PROSAIL model. ISPRS Open Journal of Photogrammetry and Remote Sensing, 100080, Elsevier BV, December 2024. [PUMA: topic_earthenvironment xack yaff] URL

Kristina Vogel, Johanna Moeller, Nina G. Bozhanova, Markus Voehler, Anja Penk, Jens Meiler, and Clara T. Schoeder. Computational Engineering of siderocalin to modulate its binding affinity to the antihypertension drug candesartan. Journal of Structural Biology, (217)1:108180, 2025. [PUMA: topic_lifescience xack yaff] URL

Marianne Kneuer, Wolf. J. Schünemann, and Giulia Bahms. Internet Control and Disinformation Across Regime Types During and After the Covid‐19 Crisis. Politics and Governance, (12)85802024. [PUMA: yaff]

Ayse Glass, Jorg R. Noennig, Burak Bek, Roman Glass, Eylul K. Menges, Iryna Okhrin, Pramod Baddam, Mariela Rossana Sanchez, Gunalan Senthil, and René Jäkel. Innovative Urban Design Simulation: Utilizing Agent-Based Modelling through Reinforcement Learning. Proceedings of the 2023 6th International Conference on Computational Intelligence and Intelligent Systems, 20–25, Association for Computing Machinery, New York, NY, USA, Feb 28, 2024. [PUMA: yaff] URL

Anderson Faustino da Silva, Jeronimo Castrillon, and Fernando Magno Quint\ ao Pereira. A Comparative Study on the Accuracy and the Speed of Static and Dynamic Program Classifiers. In IEEE (Eds.), Proceedings of the 34th ACM SIGPLAN International Conference on Compiler Construction (CC 2025), Association for Computing Machinery, New York, NY, USA, March 2025. [PUMA: xack yaff]

Christopher Rost, Riccardo Tommasini, Angela Bonifati, Emanuele Della Valle, Erhard Rahm, Keith W Hare, Stefan Plantikow, Petra Selmer, and Hannes Voigt. Seraph: Continuous Queries on Property Graph Streams.. EDBT, 234--247, 2024. [PUMA: area_bigdata topic_graph xack yaff]

Miriam Louise Carnot, Eric Peukert, and Bogdan Franczyk. Enhancing Roadway Safety: LIDAR-based Tree Clearance Analysis. CoRR, (abs/2402.18309)2024. [PUMA: area_bigdata xack yaff] URL

Vincent D Friedrich, Peter Pennitz, Emanuel Wyler, Julia M Adler, Dylan Postmus, Luiz Gustavo Teixeira Alves, Julia Prigann, Fabian Pott, Daria Vladimirova, Thomas Hoefler, Cengiz Goekeri, Markus Landthaler, Christine Goffinet, Antoine-Emmanuel Saliba, Markus Scholz, Martin Witzenrath, Jakob Trimpert, Holger Kirsten, and Geraldine Nouailles. Neural Network-Assisted Humanization of COVID-19 Hamster scRNAseq Data Reveals Matching Severity States in Human Disease. Cold Spring Harbor Laboratory, January 2024. [PUMA: Data HCOVID-19 Severity States scRNAseq xack yaff] URL

João Paulo C. de Lima, Benjamin F. Morris III, Asif Ali Khan, Jeronimo Castrillon, and Alex K. Jones. Count2Multiply: Reliable In-memory High-Radix Counting. In arxiv (Eds.), 1-14, Arxiv, September 2024. [PUMA: LLM accelerator computing-in-memory xack yaff] URL

Marie-Sophie von Braun, Kristin Starke, Lucas Peter, Daniel Kürsten, Florian Welle, Hans Ralf Schneider, Max Wawrzyniak, Daniel P O Kaiser, Gordian Prasse, Cindy Richter, Elias Kellner, Marco Reisert, Julian Klingbeil, Anika Stockert, Karl-Titus Hoffmann, Gerik Scheuermann, Christina Gillmann, and Dorothee Saur. Prediction of tissue and clinical thrombectomy outcome in acute ischaemic stroke using deep learning. In Masud Husain (Eds.), Brain, awaf013, January 2025. [PUMA: biomarker cdss cnn computer_vision deep_learning neuroimaging neurology nopdf topic_lifescience xack yaff] URL

Victor Jüttner, Martin Grimmer, and Erik Buchmann. ChatIDS: Advancing Explainable Cybersecurity Using Generative AI. International Journal On Advances in Security, (17)1,22024. [PUMA: area_responsibleai prof_privacy yaff]

Victor Jüttner, Arthur Fleig, and Erik Buchmann. ChatAnalysis: Can GPT-4 Undermine Privacy in Smart Homes with Data Analysis?. Proceedings of the 11th Workshop Mensch-Maschine-Interaktion in sicherheitskritischen Systemen - Mensch und Computer (MuC'24), 2024. [PUMA: yaff]

Nico Eisenhauer, Karin Frank, Alexandra Weigelt, Bartosz Bartkowski, Rémy Beugnon, Katja Liebal, Miguel Mahecha, Martin Quaas, Djamil Al-Halbouni, Ana Bastos, and others. A belowground perspective on the nexus between biodiversity change, climate change, and human well-being. Journal of Sustainable Agriculture and Environment, (3)2:e212108, 2024. [PUMA: yaff]

Clemens Mosig, Miguel Mahecha, David Montero, Yan Cheng, Oscar Perez Priego, Mirela Beloiu, Michele Volpi, Stéphanie Horion, Hooman Latifi, Elham Shafeian, Fabian Fassnacht, Selina Ganz, Katarzyna Zielewska-Büttner, Etienne Laliberté, Myriam Cloutier, Marie-Therese Schmehl, Annett Frick, Helene Müller-Landau, KC Cushman, Joseph Hupy, Qin Ma, Yanjun Su, Pratima Khatri-Chhetri, Stefan Kruse, Julian Frey, Felix Schiefer, Samuli Junttila, Alastair Potts, Andreas Uhl, Christian Rossi, and Tej Kattenborn. Mapping Tree Mortality at Global Scale Using Sentinel-2. EGU24-182302024. [PUMA: yaff]

Clemens Mosig, Janusch Vajna-Jehle, Miguel D Mahecha, Yan Cheng, Henrik Hartmann, David Montero, Samuli Junttila, Stephanie Horion, Mirela Beloiu Schwenke, Stephen Adu-Bredu, Djamil Al-Halbouni, Matthew Allen, Jan Altman, Claudia Angiolini, Rasmus Astrup, Caterina Barrasso, Harm Bartholomeus, Benjamin Brede, Allan Buras, Erik Carrieri, Gherardo Chirici, Myriam Cloutier, KC Cushman, James W Dalling, Jan Dempewolf, Martin Denter, Simon Ecke, Jana Eichel, Anette Eltner, Maximilian Fabi, Fabian Fassnacht, Matheus Pinheiro Feirreira, Julian Frey, Annett Frick, Selina Ganz, Matteo Garbarino, Milton Garcia, Matthias Gassilloud, Marziye Ghasemi, Francesca Giannetti, Roy Gonzalez, Carl Gosper, Konrad Greinwald, Stuart Grieve, Jesus Aguirre Gutierrez, Anna Goeritz, Peter Hajek, David Hedding, Jan Hempel, Melvin Hernandez, Marco Heurich, Eija Honkavaara, Tommaso Jucker, Jesse M Kalwij, Pratima Khatri-Chhetri, Hans-Joachim Klemmt, Niko Koivumaeki, Kirill Korznikov, Stefan Kruse, Robert Krueger, Etienne Laliberte, Liam Langan, Hooman Latifi, Jan Lehmann, Linyuan Li, Emily Lines, Javier Lopatin, Arko Lucieer, Marvin Ludwig, Antonia Ludwig, Paeivi Lyytikaeinen-Saarenmaa, Qin Ma, Giovanni Marino, Michael Maroschek, Fabio Meloni, Annette Menzel, Hanna Meyer, Mojdeh Miraki, Daniel Moreno-Fernandez, Helene C Muller-Landau, Mirko Maelicke, Jakobus Moehring, Jana Muellerova, Paul Neumeier, Roope Naesi, Lars Oppgenoorth, Melanie Palmer, Thomas Paul, Alastair Potts, Suzanne Prober, Stefano Puliti, Oscar Perez-Priego, Chris Reudenbach, Christian Rossi, Nadine Katrin Ruehr, Paloma Ruiz-Benito, Christian Mestre Runge, Michael Scherer-Lorenzen, Felix Schiefer, Jacob Schladebach, Marie-Therese Schmehl, Selina Schwarz, Rupert Seidl, Elham Shafeian, Leopoldo de Simone, Hormoz Sohrabi, Laura Sotomayor, Ben Sparrow, Benjamin SC Steer, Matt Stenson, Benjamin Stoeckigt, Yanjun Su, Juha Suomalainen, Michele Torresani, Josefine Umlauft, Nicolas Vargas-Ramirez, Michele Volpi, Vicente Vasquez, Ben Weinstein, Tagle Casapia Ximena, Katherine Zdunic, Katarzyna Zielewska-Buettner, Raquel Alves de Oliveira, Liz van Wagtendonk, Vincent von Dosky, and Teja Kattenborn. deadtrees. earth-An Open-Access and Interactive Database for Centimeter-Scale Aerial Imagery to Uncover Global Tree Mortality Dynamics. bioRxiv, 2024.10. 18.619094, Cold Spring Harbor Laboratory, 2024. [PUMA: yaff]

Chaonan Ji, Tonio Fincke, Vitus Benson, Gustau Camps-Valls, Miguel-Angel Fernandez-Torres, Fabian Gans, Guido Kraemer, Francesco Martinuzzi, David Montero, Karin Mora, Oscar J Pellicer-Valero, Claire Robin, Maximilian Soechting, Melanie Weynants, and Miguel D Mahecha. DeepExtremeCubes: Integrating Earth system spatio-temporal data for impact assessment of climate extremes. arXiv preprint arXiv:2406.18179, 2024. [PUMA: yaff]

Tristan Williams, Francesco Martinuzzi, Gustau Camps-Valls, and Miguel D Mahecha. Evaluating Forest Resilience in Europe with Deep Learning Persistence Analysis. EGU24-20805Copernicus Meetings, 2024. [PUMA: yaff]

David Montero, Miguel D Mahecha, Francesco Martinuzzi, César Aybar, Anne Klosterhalfen, Alexander Knohl, Franziska Koebsch, Jesús Anaya, and Sebastian Wieneke. Estimating Gross Primary Production via Recurrent Neural Networks: A comparative analysis. EGU24-6773Copernicus Meetings, 2024. [PUMA: yaff]

David Montero, César Aybar, Miguel D Mahecha, Francesco Martinuzzi, Maximilian Söchting, and Sebastian Wieneke. A standardized catalogue of spectral indices to advance the use of remote sensing in Earth system research. Scientific Data, (10)1:1-20, Nature Publishing Group, 2023. [PUMA: yaff]

Francesco Martinuzzi, Miguel D Mahecha, Gustau Camps-Valls, David Montero, Tristan Williams, and Karin Mora. Impact Predictability: Exploring Extremes in Biosphere Dynamics with Recurrent Neural Networks. EGU24-9569Copernicus Meetings, 2024. [PUMA: yaff]

Gustau Camps-Valls, Miguel-Ángel Fernández-Torres, Kai-Hendrik Cohrs, Adrian Höhl, Andrea Castelletti, Aytac Pacal, Claire Robin, Francesco Martinuzzi, Ioannis Papoutsis, Ioannis Prapas, Jorge Pérez-Aracil, Katja Weigel, Maria Gonzalez-Calabuig, Markus Reichstein, Martin Rabel, Matteo Giuliani, Miguel Mahecha, Oana-Iuliana Popescu, Oscar J Pellicer-Valero, Said Ouala, Sancho Salcedo-Sanz, Sebastian Sippel, Spyros Kondylatos, Tamara Happé, and Tristan Williams. AI for Extreme Event Modeling and Understanding: Methodologies and Challenges. 2024. [PUMA: yaff]

David Montero, Miguel D Mahecha, Francesco Martinuzzi, César Aybar, Anne Klosterhalfen, Alexander Knohl, Franziska Koebsch, Jesús Anaya, and Sebastian Wieneke. Recurrent Neural Networks for Modelling Gross Primary Production. 4214-4217, IEEE, 2024. [PUMA: yaff]

Sina Mehrdad, Dörthe Handorf, Ines Höschel, Khalil Karami, Johannes Quaas, Sudhakar Dipu, and Christoph Jacobi. Arctic climate response to European radiative forcing: a deep learning study on circulation pattern changes. Weather and Climate Dynamics, (5)4:1223-1268, Copernicus Publications, 2024. [PUMA: topic_earthenvironment yaff]

David Montero, Guido Kraemer, Anca Anghelea, César Aybar, Gunnar Brandt, Gustau Camps-Valls, Felix Cremer, Ida Flik, Fabian Gans, Sarah Habershon, and et al.. Earth System Data Cubes: Avenues for advancing Earth system research. Environmental Data Science, (3):e27, 2024. [PUMA: topic_earthenvironment xack yaff]

David Antony Selby, Rashika Jakhmola, Maximilian Sprang, Gerrit Grossmann, Hind Raki, Niloofar Maani, Daria Pavliuk, Jan Ewald, and Sebastian Vollmer. Visible neural networks for multi-omics integration: a critical review. bioRxiv, Cold Spring Harbor Laboratory, 2024. [PUMA: topic_lifescience yaff] URL