Comprehensive benchmarking of software for mapping whole genome bisulfite data: from read alignment to DNA methylation analysis. Brief. Bioinform., (22)5Oxford University Press (OUP), September 2021. [PUMA: DNA WGBS benchmark bisulfite epigenetics genome mapping methylation non-model plants sequencing software whole zno]
Artificial intelligence in liver diseases: Improving diagnostics, prognostics and response prediction. JHEP Rep., (4)4:100443, Elsevier BV, April 2022. [PUMA: AI CNN Communications DICOM Diagnosis Digital HCC Imaging Individual ML MVI Medicine NAFLD NASH Prognosis Reporting TACE TRIPOD Transparent WSIs a and artificial carcinoma chemoembolisation convolutional data deep diagnostic disease fatty for hepatocellular images imaging in integration intelligence invasion learning liver machine microvascular model multimodal multivariable network neural non-alcoholic of or prediction slide steatohepatitis support system topic_lifescience transarterial whole zno]
Artificial intelligence predicts immune and inflammatory gene signatures directly from hepatocellular carcinoma histology. J. Hepatol., (77)1:116--127, Elsevier BV, July 2022. [PUMA: artificial deep gene image immune signatures; slide topic_lifescience whole zno learning intelligence pathology]
Tracing the evolution of the heterotrimeric G protein $\alpha$ subunit in Metazoa. BMC Evol. Biol., (18)1:51, April 2018. [PUMA: Evolution; G Genome Heterotrimeric Orthology; Paralog; Whole annotation; coupled duplication genome protein protein; receptors; topic_lifescience yaff]