Publications

Dustyn Eggers, Christian Höner zu Siederdissen, and Peter F. Stadler. Accuracy of RNA Structure Prediction Depends on the Pseudoknot Grammar. Advances in Bioinformatics and Computational Biology, 20–31, Springer Nature Switzerland, 2022. [PUMA: DependsPseudoknot Grammar Prediction RNA Structure nopdf] URL

Pranav Kodali, Clara T Schoeder, Samuel Schmitz, James E Crowe, Jr, and Jens Meiler. RosettaCM for antibodies with very long HCDR3s and low template availability. Proteins, (89)11:1458--1472, Wiley, November 2021. [PUMA: Rosetta antibody benchmark homology loop modeling prediction structure topic_lifescience zno]

Ronny Lorenz, and Peter F Stadler. RNA secondary structures with limited base pair span: Exact backtracking and an application. Genes (Basel), (12)1:14, MDPI AG, December 2020. [PUMA: RNA algorithm elements hyper-stable prediction scanning secondary structure yaff]

Kaitlyn V Ledwitch, Georg Künze, Jacob R McKinney, Elleansar Okwei, Katherine Larochelle, Lisa Pankewitz, Soumya Ganguly, Heather L Darling, Irene Coin, and Jens Meiler. Sparse pseudocontact shift NMR data obtained from a non-canonical amino acid-linked lanthanide tag improves integral membrane protein structure prediction. J. Biomol. NMR, (77)3:69--82, June 2023. [PUMA: (IMPs) (PCSs) (ncAAs) Click Integral Non-canonical Pseudocontact Rosetta Structure acids amino chemistry membrane prediction proteins shifts topic_lifescience zno]